BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27660.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492019 jgi|Araly1|492019|fgenesh2_kg.7__1452__AT4G27660.1 819 0.0
Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1 111 6e-24
> Ahg492019 jgi|Araly1|492019|fgenesh2_kg.7__1452__AT4G27660.1
Length=721
Score = 819 bits (443), Expect = 0.0
Identities = 658/751 (88%), Gaps = 58/751 (8%)
Strand=Plus/Plus
Query 72 AAAAAGATCGAAACTTTACAGTCGTAGGAAGGaaaaaaaTGGTGAGAAAGCGAAGAGTTG 131
||||||||||||| |||||||||| || |||| |||||||||||| |||||||||| |
Sbjct 19 AAAAAGATCGAAAATTTACAGTCGAAGAAAGG-AAAAAATGGTGATTAAGCGAAGAG-AG 76
Query 132 -TAGTGGGGATCACACCAGATCCATGTgagacaaagaagaaaacgaaaagcaagcgaaga 190
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ATAGTGGAGATTACACCAGATCCATGTGAGACAAAGAAGAAAACGAAAAGCAAGCGAAGA 136
Query 191 aagagacttagt---aaggaggaggaagaagaagaaga-g--ggaaCACCTCTCAGAGGT 244
|||||||||||| ||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 137 AAGAGACTTAGTAAGAAGGAGGAGGAAGAAGAAGAAGACGATGGCACACCTCTTAGAGGT 196
Query 245 ATATTTTGTCTCAAAACACGACAAGATATGAAGATTTTCGAAGAGAAAGAGGATTGCTTT 304
||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 197 ATATTTTGTCTTAAAAAAAGACAAGATATGAAGATTTTCGAGGAGAAAGAGGATTGCTTT 256
Query 305 ATCCTCGATTTCGATCCCAACGATTCATTTGATGCACGAAAGCTCTCCGATAGCCCTGCA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 257 ATCCTCGATTTCGATCCCAACGATTCATTTGATGCACGAAAGCTCTCCGATAGCCCTGAA 316
Query 365 TCTGAATGT-GACGACGACGTGGCGATTGTCCATGAGAAAGGCCAGGTGGCTTGTAGGGA 423
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 317 TCTGAC-GACGACGACGACGTGGCGATTATCCATGAGAAAGGCCAGGTGGCTTGTAGGGA 375
Query 424 TTTTCCACATCCAAGGCATCTCTGCTTGAAATTCCCCTTTGAATCAAGTCAACACTCATC 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 376 TTTTCCACATCCGAGGCATCTCTGCTTGAAATTCCCCTTTGAATCAAGTCAACACGCATC 435
Query 484 ACATTGTAATCAGTGTTACTGTTATGTCTGCGATGTGGTTGCGCCTTGTGC-ATATTGGA 542
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 436 ACATTGTAATCAGTGTTACTGTTATGTCTGCGATGTGGCTGCGCCTTGTGCCA-ATTGGA 494
Query 543 CGGCTAGTTTTGCTACACCGCACTGTGAGGCATTAGAGAACAG-TAAATGGAAGCCTATA 601
||| ||||| |||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 495 CGGTTAGTTATGCTACACCGCATTGTGAGGCATTAGAGAAC-GCTAGATGGAAGCCTATA 553
Query 602 CGCAAGTTGTACCGGGACCTTCCTGCTGCTGGCCTTCGTGTAACCACCAAGAAGTGAAGA 661
|| | | | | | || | | | ||||||||||| || |||||||||
Sbjct 554 CG----T-G--C-------T-C--GC--C-G---T-CGTGTAACCACTAACAAGTGAAGA 589
Query 662 CTTCTCTCATGTGGTGTTGAGATTGATGAATAAGAGTAATGTTGTGCTCTATTTCCCTCA 721
||||||||||||| | |||||||||||||||||||||| |||||| || | |
Sbjct 590 CTTCTCTCATGTGATTTTGAGATTGATGAATAAGAGTATTGTTGT-----AT--C--T-- 638
Query 722 TCTTCAGCTGAATATTTCGTTTACTGAAGAAACtttttttttttGTAAAATCGGTTATTG 781
|| |||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||
Sbjct 639 TC---AGCTGAATGTTTTGCTTACTGAAGAAACCTTTTTTT---GTAAAATCGGTTATTG 692
Query 782 AGTTTCATATATAAATGATTTTAGATTTCAC 812
|||||| | |||||||| |||||||||||||
Sbjct 693 AGTTTC-T-TATAAATGGTTTTAGATTTCAC 721
> Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1
Length=546
Score = 111 bits (60), Expect = 6e-24
Identities = 99/117 (85%), Gaps = 6/117 (5%)
Strand=Plus/Plus
Query 208 ggaggaagaa-gaagaagaggga-aCACCTCTCAGAGGTATATTTTGTCTCAAAACACGA 265
||| ||| || |||||||| || ||||| || ||||| ||||| ||||| |||||| ||
Sbjct 228 GGA-GAAAAAGGAAGAAGA-TGACACACCACTAAGAGGCATATTCTGTCTGAAAACAAGA 285
Query 266 CAAGATATGAAGATTTTCGAAGAGAA-AGAGGATTGCTTTATCCTCGATTTCGATCC 321
||||| ||||| | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 286 CAAGACATGAAAAGATTCGAAGA-AACAGAGGATTGCTTTATCCTCGATTTCGATCC 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5