BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27680.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492017 jgi|Araly1|492017|fgenesh2_kg.7__1450__AT4G27680.1 2303 0.0
Ahg495431 jgi|Araly1|495431|fgenesh2_kg.8__1247__AT5G53540.1 1014 0.0
Ahg495939 jgi|Araly1|495939|fgenesh2_kg.8__1755__AT5G58290.1 93.5 4e-18
> Ahg492017 jgi|Araly1|492017|fgenesh2_kg.7__1450__AT4G27680.1
Length=1415
Score = 2303 bits (1247), Expect = 0.0
Identities = 1361/1417 (96%), Gaps = 4/1417 (0%)
Strand=Plus/Plus
Query 1 GCTCTGTCGTCGTCCACAAGAACAACCAAATTTGTTTCCGTCTTCTGCTAACATATCCT- 59
||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||
Sbjct 1 GCTCTGTCGTCGTCCACAAGAACAA-CAAACCT-TTTCCGTCTTCTGCAAACATATCCTC 58
Query 60 CTTTTTCATCTGGGAACCCTAATTTCTTGACTAACTT-AGGGTTTTATTTATCCATTTGA 118
| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 59 CGTTTTCATCTGGGAACCCTAATTTCTTGACTATTTTAAGGTTTTTATTTATCCATTTGA 118
Query 119 GATACTCTGTAATTGAAAGGTTGAATTTTTAGAAGAGACATGGGAGGTTCGTCGGAGACA 178
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 119 GATCCTCTGTAATTGAAAGGTTGAATTTTTGGAAGAGACATGGGACGTTCGTCGGAGACA 178
Query 179 AAGATCTTACAAGAACTCATACTTTACGCGGCGAGCGCTGCTTTCAGCTGCTTGGTTCTC 238
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGATCTTACAAGAACTTATACTTTACGCGGCGAGCGCTGCTTTCAGCTGCTTGGTTCTG 238
Query 239 TTTGCGGGTCTTCGTCATCTCGATCCTAATCGTGAGGCTTCTAAAAAAGCTCTCGAGCAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTGCGGGTCTTCGTCATCTCGATCCTAATCGTGAGGCTTCTAAAAAAGCTCTCGAGCAT 298
Query 299 AAGAAGGAAATCTCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAAGGAAATCTCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGAT 358
Query 359 GTAATTGCATGTGATGTGATAAATCCAGACCACATTGATGTGGAGTTTGGTTCTATTGGA 418
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 359 GTAATAGCATGTGATGTGATAAATCCAGACCACATTAATGTGGAGTTTGATTCTATTGGA 418
Query 419 GGGTTGGAGACCATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCACTGAAAAGACCT 478
|| | ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 419 GGACTAGAGACTATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCATTGAAGAGACCT 478
Query 479 GAGCTTTTTGCTTACGGGAAGCTTCTTGGACCTCAAAAAGGTGTCTTGCTCTATGGACCT 538
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 GAGCTTTTTGCTTATGGGAAGCTTCTTGGACCTCAAAAGGGTGTCTTGCTCTATGGACCT 538
Query 539 CCTGGTACTGGAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAGTCAGGAGCTGTTTTC 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 539 CCTGGTACTGGAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAATCAGGAGCGGTTTTC 598
Query 599 ATTAATGTTAGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTAATGTTAGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTT 658
Query 659 TCTGCTGTGTTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTGCTGTGTTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTT 718
Query 719 GAGAGCTTTCTTGGTCAGCGCCGTTCAACAGATCATGAAGCTATGGCCAACATGAAGACT 778
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 719 GAGAGCTTTCTTGGTCAGCGCCGTTCAACAGATCATGAAGCAATGGCGAACATGAAGACT 778
Query 779 GAGTTTATGGCTTTATGGGATGGATTCTCTACTGATCCGCATGCAAGGGTTATGGTTCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGTTTATGGCTTTATGGGATGGATTCTCTACTGATCCGCATGCAAGGGTTATGGTTCTT 838
Query 839 GCTGCAACTAACAGACCGTCAGAGCTTGATGAAGCAATATTAAGGCGTCTTCCTCAGGCC 898
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 GCTGCAACCAACAGACCATCAGAGCTTGATGAAGCAATATTGAGGCGTCTTCCTCAGGCC 898
Query 899 TTTGAGATTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGAGATTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAA 958
Query 959 GGAGAGAGGGTGGAACCTGATATTGACTTTGATCACATAGCTCGCTTATGCGAAGGCTAT 1018
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 959 GGAGAGAGGGTGGAACCTGATATTGACTTTGATCATGTAGCTCGCTTATGCGAAGGCTAT 1018
Query 1019 ACCGGATCAGACATTTTTGAGCTATGCAAGAAAGCAGCTTACTTCCCTATCAGAGAAATC 1078
|||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||
Sbjct 1019 ACCGGATCAGACATTTTTGATCTCTGCAAGAAAGCGGCTTACTTTCCTATCAGAGAAATC 1078
Query 1079 CTAGATGCAGAGAGAAAGGGGAAACCATGTTTGGACCCTAGGCCATTATCACAGTTAGAT 1138
||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 1079 CTAGAGGCAGAGAAAAAGGGGACACCATGTTTGTCCCCTAGGCCATTATCACAGTTGGAT 1138
Query 1139 TTGGAGAAGGTTCTTGCAACGTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCATTG 1198
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTGAGAAGGTTCTTGCTACTTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCATTG 1198
Query 1199 AGCTCGCAGTCCTCGGCTTGGAGAGGCTCAAGGGAACCAGATGAGGTCCAGGCAGCGATA 1258
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1199 AGCTCGCAGTCCTCGGCTTGGAGAGGCTCAAGCGAACCAGATGAGGTCCAAGCAGCGATA 1258
Query 1259 AGTGGGATCTCGAAGCTTCTAGTTTCTCAGATCATTAACCTACAGTCAGAATCTCAGGAT 1318
||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||
Sbjct 1259 AGTGGGATCTCGAAGCTTCTACTTTCTCAGATCATTAATCTCCAGTCAGATTCTCAGGAT 1318
Query 1319 TCATGGCAGCGGGATCCCGAAGAAGATTCCCGATGAAATTCCGGATCACTTTTATAAACG 1378
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1319 TCATGGCAGCGGGATCCCGAAGAAGAATCCCGATGAAATTCCGGATCACTTTTATAAACG 1378
Query 1379 TTCTGGTGTTTTCATTGGAAGTTTAGAATTTGTCACA 1415
|||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTCTGGTGTTTTCATTGGAAGTTTAGAATTTGTCACA 1415
> Ahg495431 jgi|Araly1|495431|fgenesh2_kg.8__1247__AT5G53540.1
Length=1379
Score = 1014 bits (549), Expect = 0.0
Identities = 972/1173 (83%), Gaps = 41/1173 (3%)
Strand=Plus/Plus
Query 197 ATACTTTACG-CGGCGAGCGCTGCTTTCAGCT-GCTTGGTTCTCTTTGCGGGTCTTCG-T 253
|||||||||| | || || ||||| || || | |||||||||||| | ||||||||
Sbjct 176 ATACTTTACGTC-GCTAGTGCTGCATTGAG-TAGCTTGGTTCTCTACGTTGGTCTTCGAG 233
Query 254 C-ATCTCGATCCTAATCGTGAGGCTTCTAAAAAAG-CTCTCGAGCATAAGAAG-GAAATC 310
| || | || || || ||||| || || |||||| ||||||||||||| ||| ||||||
Sbjct 234 CAAT-T-GACCCGAACCGTGACGCAGCT-AAAAAGTCTCTCGAGCATAA-AAGAGAAATC 289
Query 311 TCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGATGTAATTGCATGT 370
| |||||||| |||||||||||| |||| ||||||| |||||||||||| ||||| |||
Sbjct 290 GCCAAACGTTTAGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGT 349
Query 371 GATGTGATAAATCCA-GACCACATTGATGTGGAGTTTGGTTCTATTGGAGGGTTGGAGAC 429
||||| ||||| ||| | ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 350 GATGTAATAAACCCATTA-CACATTGATGTTGAGTTTGGTTCTATTGGAGGGTTAGAGTC 408
Query 430 CATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCACTGAAAAGACCTGAGCTTTTTGC 489
|| ||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||||
Sbjct 409 AATTAAGCAAGCTTTGTATGAGCTAGTGATTCTACCATTGAAAAGACCTGAACTTTTTGC 468
Query 490 TTACGGGAAGCTT-CTTGGACCTCAAAAAGGTGTCTTGCTCTATGGACCTCCTGGTACTG 548
||| |||||| || ||||| |||||||| || || ||| | ||||| |||||||||||||
Sbjct 469 TTATGGGAAG-TTACTTGGTCCTCAAAAGGGAGTTTTGTTGTATGGTCCTCCTGGTACTG 527
Query 549 GAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAGTCAGG-AGCTGTTTTCATTAATGTT 607
| ||||||||||||||||| || ||||| | ||| || || ||||||||| |||||||||
Sbjct 528 GGAAGACTATGCTTGCTAAAGCGATTGCGAGAGAATC-GGAAGCTGTTTTTATTAATGTT 586
Query 608 AGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTTTCTGCTGTG 667
| |||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 587 AAGGTTTCTAATTTGATGAGCAAGTGGTTTGGTGATGCTCAGAAGCTTGTGTCTGCCGTG 646
Query 668 TTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTTGAGAGCTTT 727
|||||||||||||| ||||||||||||||||| |||||||| |||||||| || || |||
Sbjct 647 TTTAGCTTGGCCTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGTTTT 706
Query 728 CTTGGTCAGCGCCGTTCAACAGATCATGAAGCTATGGCCAACATGAAGACTGAGTTTATG 787
||||| ||||| ||||| || ||| ||||||| ||| || ||||||||||||||||||
Sbjct 707 CTTGGCCAGCGTCGTTCGACTGATAATGAAGCAATGTTGAATATGAAGACTGAGTTTATG 766
Query 788 GCTTTATGGGATGGATTCT-CTACTGATCC-GCATGCAAGGGTTATGGTTCTTGCTGCAA 845
||||||||||||||||| | |||| || || | |||| ||||| ||||||||||||||||
Sbjct 767 GCTTTATGGGATGGATT-TACTACAGA-CCAGAATGCGAGGGTGATGGTTCTTGCTGCAA 824
Query 846 CTAACAGACCGTCAGAGCTTGATGAAGCAATATTAAGGCGTCTTCCTCAGGCCTTTGAGA 905
|||||||||| || |||||||||||||||||||| |||||| |||||||| | |||||||
Sbjct 825 CTAACAGACCTTCGGAGCTTGATGAAGCAATATTGAGGCGTTTTCCTCAGTCATTTGAGA 884
Query 906 TTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAAGGAGAGA 965
| || || |||||| |||||||||||||| | |||||||||||| | ||||||||||||
Sbjct 885 TCGGGATGCCTGATTGCCGGGAGAGAGCTCAAATATTGAAAGTGGTTTTGAAAGGAGAGA 944
Query 966 GGGTGGAACCTGATATTGACTTTGATCACATAGCTCGCTTATGCGAAGGCTATACCGGAT 1025
|||| ||||| |||||| ||| |||||| ||||||| ||||| |||| |||||| ||||
Sbjct 945 GGGTTGAACCAGATATTAACTATGATCATGTAGCTCGTTTATGTGAAGACTATACTGGAT 1004
Query 1026 CAGACATTTTTGAGCTATGCAAGAAAGCAGCTTACTTCCCTATCAGAGAAATCCTAGATG 1085
|||| |||||||| || ||||| ||||||||||||||||| ||| ||||||||||||| |
Sbjct 1005 CAGATATTTTTGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGG 1064
Query 1086 CAGAGAGAAAGGGGAAACCA-TGTT-TG-GACCCTAGGCCATTATCACAGTTAGATTTGG 1142
| |||| |||||| |||| | | || || | || ||| ||||| ||||| |||| ||||
Sbjct 1065 CGGAGAAAAAGGGCAAACAAAT-TTCTGTG-CC-TAGACCATTGTCACAACTAGACTTGG 1121
Query 1143 AGAAGGTTCTTGCAACGTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCA--TTGA- 1199
||||||||||||| || || ||||||||||||||||| ||| |||||||| | || |
Sbjct 1122 AGAAGGTTCTTGCTACCTCGAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAA 1181
Query 1200 GCTCGCAGTCCTCGGCT-TGGAGAGGCTC-AAGGGAA--CCAGATGAGGTCCAGGCAGCG 1255
||||||| || || || |||||| | || ||| || || || |||||||| |||||
Sbjct 1182 GCTCGCAATCTTCA-CTCTGGAGAAG-TCCAAGC-AATGCC-GACGAGGTCCAAGCAGCT 1237
Query 1256 ATAAGTGGGATCTCGAAGCTTCTAGTTTCTCAGA-TCATTAACCTACAGTCAGAATCTCA 1314
|||| || || || |||||| | || |||| | | | ||| | ||| |||| |||||
Sbjct 1238 ATAAACGGCATTTCAAAGCTTTTCGTCTCTC-GCCTTAGAAACATCCAGCCAGACTCTCA 1296
Query 1315 GGATTCATGGCAGCGGGATCCCGAAGAAGATTC 1347
||||||| || | ||| | |||| ||||||
Sbjct 1297 AGATTCATATCAACATGATTCAGAAGGAGATTC 1329
> Ahg495939 jgi|Araly1|495939|fgenesh2_kg.8__1755__AT5G58290.1
Length=1523
Score = 93.5 bits (50), Expect = 4e-18
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 518 GGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGCTTG-CTAAGGCTATTGC 576
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 653 GGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATG-TTGGCTAAGGCTGTTGC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5