BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27690.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945271 jgi|Araly1|945271|scaffold_701500.1 1594 0.0
Ahg331709 jgi|Araly1|331709|fgenesh1_pm.C_scaffold_8001052 1038 0.0
> Ahg945271 jgi|Araly1|945271|scaffold_701500.1
Length=954
Score = 1594 bits (863), Expect = 0.0
Identities = 924/954 (97%), Gaps = 1/954 (0%)
Strand=Plus/Plus
Query 108 TTGAGATCTAGTCTTCTTATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCCTGCAAC 167
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TTGAGATCTAGTCTTCTGATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCGTGCAAC 60
Query 168 ATCTCCATCACTTTTTCTGATGGCAAAAATCGTAAACAGGTTCCCATGAAGAAAGAAAAT 227
|| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATTTCAATCACTTTTTCCGATGGCAAAAATCGTAAACAGATTCCCATGAAGAAAGAAAAT 120
Query 228 GGTCAGACGGCTCTGGTGCCTCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGC 287
||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||||
Sbjct 121 GGTCAAACGGCTCTGGTGCCACTTTTCCATAGTCAAGATACTATTTCTGGGAAGGTTTGC 180
Query 288 ATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGT 240
Query 348 CAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGAA 407
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGACTTCACTTCCTTGGTTCGTGAA 300
Query 408 CTGGATGTACCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCTACTGTG 467
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CTGGATGTCCCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCAACTGTG 360
Query 468 GAGATGCCATACGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTA 527
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GAGATGCCATATGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTTCTCAAAGTA 420
Query 528 ACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTACGGAAC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTCCGGAAC 480
Query 588 TACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGC 540
Query 648 CTGCACATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGG 707
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 CTGCACATTGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGG 600
Query 708 AAAATATATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGG 767
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAATCTATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGG 660
Query 768 CGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTT 827
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 661 CGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACACTTGCGAAATTT 720
Query 828 GAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCC 887
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 GAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCAATACCTGTAAGACTGTTTCTGGCC 780
Query 888 CCATATGATCTTACACCAACGCATCGCAACATCAACAACAAATTCAGCGTCAAGTATTAT 947
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CCATACGATCTTACACCAACACATCGCAACATTAACAACAAATTCAGCGTCAAGTATTAT 840
Query 948 CTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACG 900
Query 1008 TTGTATAGGTTGAAGGAAGACGCATCATCTTGATGATAATAACTACTGT-AAGG 1060
||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 901 TTGTACAGGTTGAAGGAAGACACATCATCTTGATGATAATAACAACTGTTAAGG 954
> Ahg331709 jgi|Araly1|331709|fgenesh1_pm.C_scaffold_8001052
Length=909
Score = 1038 bits (562), Expect = 0.0
Identities = 804/920 (87%), Gaps = 19/920 (2%)
Strand=Plus/Plus
Query 129 ATGAATTATCTTCTTGGAGCCTTCAAGCCCGCCTGCAACATCTCCATCACTTTTTCTGAT 188
|||||||||||||||||||| |||||||| || || || || || ||||| || |||||
Sbjct 1 ATGAATTATCTTCTTGGAGCTTTCAAGCCGGCATGTAATATTTCAATCACATTCACTGAT 60
Query 189 GGCAAAAATCGTAAACAGGTTCCCATGAAGAAAGAAAATGGTCAGACGGCTCTG-GTGCC 247
|| ||||| ||||||||||| ||||| |||||||| ||||| || | | | || | ||
Sbjct 61 GGGAAAAACCGTAAACAGGTACCCATTAAGAAAGATAATGGACAAATAGTTATGACT-CC 119
Query 248 TCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGCATTGAACCATATCAAGGGAA 307
|| ||||| |||||||| |||||| | |||||| || |||||||||||||||||||||
Sbjct 120 ACTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAA 179
Query 308 AAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGA 367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGGTGGAGCACAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGA 239
Query 368 CAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGA-ACTGGATGTACCTGGAGAAA 426
|||||||||||| ||||| |||||||||||||| ||||| | || |||||||||| ||||
Sbjct 240 CAGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTG-ATGTACCTGGGGAAA 298
Query 427 TATACGAAAGGAAGACATACCCTTTTGAATTTCCTA-CTGTGGAGATGCCATACGAGACA 485
|||| ||||| ||||||||||||||||||||| | | | || ||||||||||| ||||||
Sbjct 299 TATATGAAAGAAAGACATACCCTTTTGAATTTTCGAGC-GTTGAGATGCCATATGAGACA 357
Query 486 TACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTAACCGTCACTCGTGGCTAC 545
|||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 358 TACAATGGCGTGAATGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTAT 417
Query 546 GCTGGAAGCATCTTGGAATACCAGGAGCTT-GTGGTACGGAACTACGCTCCA-CTTCCTG 603
|||||||||||| ||||||||||||| ||| ||||| || ||||| | ||| || |||
Sbjct 418 GCTGGAAGCATCGTGGAATACCAGGA-CTTTGTGGTCCGTAACTATGTTCCGTCT-CCTC 475
Query 604 -ATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCACATCGAGTTT 662
| || ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 476 CA-ATCAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGCCTGCATATCGAGTTT 534
Query 663 GAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGGAAAATATATTTTCTT 722
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 535 GAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTT 594
Query 723 CTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGAATCAACAGGT 782
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 595 CTGGTGAGAATCAAGATAAAGAATATGGATCTTGAGATCAGACGGCGAGAATCAACTGGA 654
Query 783 GCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTTGAGTTGATGGATGGA 842
||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||||||
Sbjct 655 GCAGGAGCTAATACTCACGTCGAGACAGAAACACTAGCCAAATTTGAGTTAATGGATGGT 714
Query 843 ACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCC-CCATATGATCTTAC 901
||||||||||||| |||||||||||||||||| |||| || | | ||||||||||| ||
Sbjct 715 GCTCCAGTTAGAGGCGAATCGATACCTGTAAGAGTGTT-CTTGACACCATATGATCTGAC 773
Query 902 ACCAACGCATC-GCAACATCAACAACAAATTCAGCGTCAAGTATTATCTGAATCTTGTAC 960
|||||||||| | ||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 774 ACCAACGCATAAG-AACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTCGTGC 832
Query 961 TGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTGTATAGGTTGA 1020
|||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| | |
Sbjct 833 TGGTGGATGAAGAGGATCGCCGTTACTTCAAGCAACAAGAAATCACCTTGTACAGGCTCA 892
Query 1021 AGGAAGACGCATCATCTTGA 1040
|||| || | | ||||||||
Sbjct 893 AGGAGGA-G-A-CATCTTGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5