BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27700.1
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492014 jgi|Araly1|492014|fgenesh2_kg.7__1447__AT4G27700.1 1548 0.0
> Ahg492014 jgi|Araly1|492014|fgenesh2_kg.7__1447__AT4G27700.1
Length=990
Score = 1548 bits (838), Expect = 0.0
Identities = 948/999 (95%), Gaps = 16/999 (2%)
Strand=Plus/Plus
Query 1 AAGCACCACATGTTCAGA-TTTTTTCCTAACAAGAAGAAAAGAAGTCGCAGTTTCATCGT 59
|||||||||||||||||| |||||||||||||||||| ||||||||| ||| | || |
Sbjct 1 AAGCACCACATGTTCAGATTTTTTTCCTAACAAGAAG-AAAGAAGTCTCAG-TGCA--G- 55
Query 60 CTTTCTTCCAT-TATCGTGCAATTAAATTCTCTCATTTTCAAGAAAATATCT-GAA-AAA 116
|||| | ||| | || | | ||| |||||||||||||||||| |||||||| || |||
Sbjct 56 -TTTCAT-CATCTCTC-TTCCATT-AATTCTCTCATTTTCAAGGAAATATCTAAAAGAAA 111
Query 117 ACAGAAACTTAACAGAAGCAGC-T-TCGATCAAGAGATGGCTTCACTTACTTCAATAGCC 174
|||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||| |||
Sbjct 112 ACAGAAACATAACAGAAGAAGCTTCTCGATCAAGAGATGGCTTCACTTACTTCAATCGCC 171
Query 175 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 231
Query 235 TCTGCCGGAGTTCGATCGGCAGCAATGGTTTCCGGTCACAAAACGCTTAAGATTCAATGC 294
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 232 TCTGCCGGAGTTCGATCGGCAGCAATGGGTTCCGGTCAAAAAACGCTCAAGATTCAATGC 291
Query 295 ACTTCAACCAAACCTGCCAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 354
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACTTCAACGAAACCTGCGAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 351
Query 355 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAG 411
Query 415 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 471
Query 475 GGAGCTATCAATGTGGAGATGTACAGACTCATAAGGGAATGGACGGCATGGGACATAGCT 534
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 472 GGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGAATGGACGGCATGGGACATAGCT 531
Query 535 CGCCGTCTTGGCTTTGCTTTCTTTGGTATCTTCTCTGGCACAGAAGAGAACCCTGAGTTT 594
|| |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 532 CGTCGTCTTGGATTTGCGTTCTTCGGTATCTTCTCTGGCACAGAAGAGAATCCTGAGTTT 591
Query 595 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTAGCTTGTTCATCC 654
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 592 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTTGCTTGTTCATCC 651
Query 655 GCGGGTACAATGAAGCCGACACAAAATCTTCCCGAAGGCCAACAATCGAGGTCTCTCATA 714
||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 652 GCGGGGACAATGAAGCCAACACAGAATCTTCCTGAAGGACAACAATCGAGGTCTCTCATA 711
Query 715 GCTGCTTATCTTCTGGTCCTTAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 GCTGCTTATCTTCTGGTCCTCAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 771
Query 775 TACACATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 834
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TACGCATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 831
Query 835 TTACTCT-AGAGTTGTCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 893
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCACTCTAAGAGTTATCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 891
Query 894 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 951
Query 954 GCAAACTCGACCGGAATCCAGAGAAAAGGAACTTGATTG 992
|||||||||||||||||| |||||||| |||||||||||
Sbjct 952 GCAAACTCGACCGGAATCTAGAGAAAAAGAACTTGATTG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36864860739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5