BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27710.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328921 jgi|Araly1|328921|fgenesh1_pm.C_scaffold_7001148 2314 0.0
Ahg346505 jgi|Araly1|346505|fgenesh1_pg.C_scaffold_4002847 780 0.0
> Ahg328921 jgi|Araly1|328921|fgenesh1_pm.C_scaffold_7001148
Length=1563
Score = 2314 bits (1253), Expect = 0.0
Identities = 1466/1569 (93%), Gaps = 14/1569 (1%)
Strand=Plus/Plus
Query 89 ATGGAACTTATAAGCACAATCAATCTCTTAACAATCGTTCTTCTACTCTTCGTTGTTTCC 148
||||||||||||||||| |||||||||||| || | ||||||| ||||| | |||||||
Sbjct 1 ATGGAACTTATAAGCACGATCAATCTCTTAGCACTTATTCTTCTGCTCTTTGGTGTTTCC 60
Query 149 AAGATATGGAAAGCTTGTTGGATCCTCCTTTTGCGTCCATTGATGCTATCAAAAAGATTC 208
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 61 AAGATATGGAAAGCTTGTTGGATCATCCTTTTGCGGCCATTGATGCTATCAAAAAGATTC 120
Query 209 AAGAAACAAGGAATCTCAGGACCAAAGTACAAAATCTTGTACGGAAACCTCAGCGAGATA 268
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AAGAAACAAGGAATCTCAGGCCCAAAGTACAAAATCTTGTACGGAAACCTAAGCGAGATA 180
Query 269 AAGAAGATGAAGAAAGAAGCTGACC-TTTGTGTTCTGGATCCCAATTCCAATGATATTTT 327
||||||||||||||||||||||||| |||| ||||||||||| || ||||| ||||| ||
Sbjct 181 AAGAAGATGAAGAAAGAAGCTGACCTTTTG-GTTCTGGATCCGAAGTCCAACGATATCTT 239
Query 328 CCCTCGTGTGTTTCCTCAGTATCACCAATGGATGTCTCAATACGGAGATACATTTCTATT 387
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CCCTCGTGTGTTTCCTCATTATCACCAATGGATGTCTCAATACGGAGAAACATTTCTATA 299
Query 388 CTGGACTGGAACAAAACCAACTATATACATCTCAAATCATGAGCTAGCGAAACAGGTCTT 447
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 300 CTGGAATGGAACAAAACCAACGATATACATCTCAAATCATGAACTAGCGAAACAGATCTT 359
Query 448 GTCGAGCAAGTTCGGTTTCACTATTATACCGGTGAAACGACCTGAGGTCTTCATACTTTT 507
||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 360 GTCGAGCAAGTTCGGTTTCTCTATTATACCGGTGAAAAGACCCGAGGTCTTCATACTTTT 419
Query 508 CGGTAAAGGACTTTCCTTTATCCAAGGTGATGATTGGATTCGCCATAGACGAATCTTGAA 567
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TGGTAAAGGACTTTCCTTTATCCAAGGTGATGATTGGGTTCGCCATAGACGAATCTTGAA 479
Query 568 CCCTGCTTTCTCCATGGATCGGCTCAAGGCCATGACACAACCGATGGGAGATTGCACCTT 627
|||||||||||||||||| || ||||||||||||||| |||||||||| ||||| |||||
Sbjct 480 CCCTGCTTTCTCCATGGACCGCCTCAAGGCCATGACAAAACCGATGGGGGATTGTACCTT 539
Query 628 -ACGGATATTTGAGGAGTGGAGAAAACAGAGAAGAAATGGTGAAGTGTTGATCAAGATTG 686
| |||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 540 GA-GGATGTTTGAGGAGTGGAGAAAAC--AG-AGAAATGGTGAAGTGGTGATCAAGATTG 595
Query 687 AGATAAGCAAAGAGTTCCATAAACTGACCGCTGACATTATAGCAACTACTGCGTTTGGAA 746
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 AGATAAGCAAAGAGTTCCATAAACTGACCGCTGACATTATAGCGACTACTGCGTTTGGAA 655
Query 747 GTAGTTATGCCGAAGGAATCGAATTGTGTAGGTCACAAACAGAGCTTGAGAAGTATTATA 806
||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 656 GTAGTTATGCCGAAGGAATCGAATTGTGTAGATCACAGACTGAGCTTGAGAAATATTATA 715
Query 807 TTAG-TTCTCT-CACTAACGTTTTCATCCCCGGAACTCAATACCTTCCTACGCCTACCAA 864
| | ||||| || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 716 AT-GCCTCTCTCCA-TAAAGTCTTCATCCCCGGAACTCAATACCTTCCTACGCCTACCAA 773
Query 865 CCTTAAACTATGGGAGCTCCATAAGAAAGTGAAGAACTCGATCAAAAGAATCATAGATTC 924
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCTTAAACTATGGGAGCTAGATAAGAAAGTGAAGAACTCGATCAAAAGAATCATAGATTC 833
Query 925 AAGGCTAAAATCAAAATGTAAGACCTATGGCTATGGGGACGATCTTCTAGGGGTCATGTT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGGCTAAAATCAAAATGTAAGACCTATGGCTATGGGGACGATCTTCTAGGGGTCATGTT 893
Query 985 GACTGCTGCGAAATCTAACGAGTATGAGAGAAAGATGAGAATGGATGAGATCATAGAGGA 1044
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAATGCGGCAAAATCTAACGAGTATGAGAGAAAGATGAGAATGGATGAGATCATAGAGGA 953
Query 1045 ATGCAAGAATTTCTACTATGCAGGGCAAGGAACTACTTCGATT-CTATTGACATGGACTA 1103
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 954 ATGCAAGAATTTCTACTATGCAGGGCAAGGAACTACTTCGCTTAC-ATTGACATGGACTA 1012
Query 1104 CGATGTTACTAAGCTTGCACCAAGGTTGGCAAGAGAAACTCAGAGAAGAGGTTTTTAATG 1163
|||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1013 CGATGTTACTGAGCTTGCACCAAGATTGGCAAGAGAAACTTAGAGAAGAGGTTTTCAATG 1072
Query 1164 AATGTGGTAAAGATAAAATCCCAGATACAGACACCTTCTCTAAACTCAAATTGATGAACA 1223
|||||||||||||||| ||||||||| |||||||||| || ||||||||| |||||||||
Sbjct 1073 AATGTGGTAAAGATAAGATCCCAGATTCAGACACCTTATCCAAACTCAAACTGATGAACA 1132
Query 1224 TGGTGTTGATGGAGTCGCTTCGTCTGTACGGACCCGTGATTAAAATTTCCCGAGAGGCAA 1283
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1133 TGGTGTTGATGGAGTCGCTTCGTCTGTATGGACCCGTGATTAAAATGTCCCGAGAGGCAA 1192
Query 1284 CACAAGATATGAAGGTAGGACACTTGGAGATCCCAAAGGGCACAAGCATTATCATACCGT 1343
|||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||
Sbjct 1193 CACAAGATATGAAGGTAGGACACTTGGAGATCCCCAAGGGCACGGGCATTATTATCCCGT 1252
Query 1344 TACTGAAGATGCACAGAGACAAGGCCATATGGGGCGAAGACGCCGAACAATTCAATCCCT 1403
| ||||||||||||| |||||||| || ||||| |||||| | ||||||||||| ||||
Sbjct 1253 TTCTGAAGATGCACACCGACAAGGCGATGTGGGGAGAAGACACGGAACAATTCAACCCCT 1312
Query 1404 TGAGATTCGAAAACGGCATTTCTCAAGCCACCATTCACCCAAACGCTCTCCTCCCGTTCT 1463
|| |||||| ||| ||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1313 TGCGATTCGTAAATGGCATTTCTCAAGCCGCCATTCACCCAAACGCTCTCATTGCGTTCT 1372
Query 1464 CAATCGGACCAAGAGCTTGCATTGCCAAAAACTTTGCCATGGTCGAAGCCAAGACCGTTC 1523
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1373 CAATCGGACCAAGAGCTTGCATTGCCAAAAACTTTGCCATGATCGAAGCCAAGACCGTGC 1432
Query 1524 TCACTATGATCCTTCAACAGTTCCAGCTTAGCCTCTCCCCCGAGTATAAGCACACGCCAG 1583
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1433 TCACTATGATCCTTCAACAGTTCCGGCTTAGCCTCTCCCCCGAGTATAAGCACACGCCAG 1492
Query 1584 TTGATCACTTCGATCTCTTCCCGCAATACGGCCTACCCGTAATGCTTCACCCTCTCGGAT 1643
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1493 TTGATCACTTCAATCTCTTTCCGCAATACGGCCTACCCGTAATGCTTCAGCCTCTTG-AT 1551
Query 1644 AGTAGTTCT 1652
|||||||||
Sbjct 1552 AGTAGTTCT 1560
> Ahg346505 jgi|Araly1|346505|fgenesh1_pg.C_scaffold_4002847
Length=1557
Score = 780 bits (422), Expect = 0.0
Identities = 1187/1541 (77%), Gaps = 113/1541 (7%)
Strand=Plus/Plus
Query 161 GCTTGTTG-GATCCTCCTTTTGCGTCCA-TTGATGCT-ATCAAAAAGATTCAAGAAA-CA 216
|||| ||| |||||| ||| || |||| ||| || | | | | ||||||||| ||| ||
Sbjct 64 GCTT-TTGTGATCCTTGTTTGGCATCCATTTG-TGGTGA-CCAGAAGATTCAA-AAACCA 119
Query 217 AGGAATCTCAGGACCAAAGTACAAAATCTTGT-ACGGAAACCTCAGCGAGATAAAGAAGA 275
|||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 120 AGGAATCTCAGGCCCAAAGTACAGAATCTT-TCACGGAAACCTCAGCGAGATAAAGAAGA 178
Query 276 TGAAGAAAGAAGCTGACCTTT-GTGTTCTGGATCCCAATTCCAATGATATTTTCCCTCGT 334
|||||| |||| || | |||| | | || ||||||| |||||||||||||||||||||
Sbjct 179 TGAAGAGAGAATCTCATCTTTCGACT-CTTGATCCCAGCTCCAATGATATTTTCCCTCGT 237
Query 335 GTGT-TTCCTCAGTATCACCAATGGATGTCTCAATACGGAGATACATTTCTATT-CTGGA 392
| | ||||||| ||||| | ||||||||||||||||||||| |||||||| || |||||
Sbjct 238 AT-TCTTCCTCATTATCAACGATGGATGTCTCAATACGGAGAGACATTTCT-TTACTGGA 295
Query 393 -CTGGAACAAAACCAACTATATACATCTCAAATCATGAGCTAGCGAAACAGGTCTTGTCG 451
| |||||| |||| | |||| ||||||| ||| ||| || || ||| | ||||||||
Sbjct 296 AC-GGAACAGAACCGAGGATATGCATCTCAGATCCTGAACTTGCAAAAAATATCTTGTCG 354
Query 452 AGCAAGTTCGGTTTCACTATTATACCGGTGAA-ACGACCTGAGGTC-TTCATACTTTTCG 509
| |||||| |||||| | | | | | || | |||| |||||| || | |||| |||
Sbjct 355 AACAAGTTAGGTTTCTTTGTCAAATCAAAGATGA-GACCCGAGGTCGTTAA-ACTTGTCG 412
Query 510 G-T--AAAGGACTT-TCCTTTATCCAAGGTGATGATTGGATTCGCCATAGACGAATCTTG 565
| | ||||||||| || |||||| ||||| ||||||| ||||||||||| ||||||||
Sbjct 413 GCTCCAAAGGACTTGTC-TTTATCGAAGGTTCTGATTGGGTTCGCCATAGAAGAATCTTG 471
Query 566 AACCCTGCTTTCTCCATGGATCGGCTCAAGGCCATGACACAACCG--ATGG-GAGATTGC 622
||||||||||||||||| ||| |||||||| |||||| | ||| |||| | |||||
Sbjct 472 AACCCTGCTTTCTCCATCGATAGGCTCAAGATCATGACT-A-CCGTGATGGTG-GATTGT 528
Query 623 AC-CTTACGGATATTTGAGGAGTGGAGAAAACAGA-GA--A-G-AA-ATG--GTG-AAGT 672
|| || | | || || ||||||||||||||| ||| || | | || | | | ||
Sbjct 529 ACGCTCAAG-ATGTTAGAGGAGTGGAGAAAAGAGAAGAGTAAGGAAGAAACAGCGCAACC 587
Query 673 GTTGATCAAGATTGAGATAAGCA-A-AGAGTTCCATAA-ACTGACCGCTGACATTATAGC 729
| |||| || | || || ||| | ||||||||| || ||| || || || | |||||
Sbjct 588 GATGATTAAAAAGGAAAT--GCACAGAGAGTTCCA-AAGACTAACAGCAGATGTAATAGC 644
Query 730 AAC-TACTGCGTTTGGAAGTAGTTATGCCGAAGGAATCGAATTGTGTAGGTCACAAACAG 788
|| | |||| |||||||||||||| | ||||||||||||| ||| ||| ||||||| |
Sbjct 645 GACCT-CTGCTTTTGGAAGTAGTTACGTCGAAGGAATCGAAGTGTTTAGATCACAAATGG 703
Query 789 AGCTTGAGAAGTATTATATTA--GTTCTCTCA-CTAACGT-TTTCATCCCCGGAACTCAA 844
||||| | |||| || ||| | || |||||| | || || ||| ||||| ||||||||
Sbjct 704 AGCTTAAAAAGTGTTGTAT-ACCGT-CTCTCAACAAA-GTCTTT-ATCCCTGGAACTCAG 759
Query 845 TACCTTCCTACGCCTACCAACCTTAA-ACTATGGGAGCTCCATAAGAAAGTGAAGAACTC 903
|| |||||||||||| | ||| || | ||||| |||| | | |||| || | || ||
Sbjct 760 TATCTTCCTACGCCTTCGAACTTTCGGA-TATGGAAGCTGGAGAGGAAAATGGATAAGTC 818
Query 904 GATCAAAAGAATCATA-GATTCAAGGCTAAAATCAAAATGTAAGACCTATGGCTATGGGG 962
|| || ||||| ||| | | | || ||| | ||| ||| | || ||||| | |
Sbjct 819 AATTAAGAGAATTATAAGGT-CGAGACTAGAGTCACAATC-A-GAT-TATGG--A-G--- 868
Query 963 ACGATCTTCTAGGGG-TCATGTTGACTGC-TGCGAAATCT-AACGAGTATGAGA-GAAAG 1018
|||||||||| ||| || |||||| || | | ||| || || | | | || | |||||
Sbjct 869 ACGATCTTCT-GGGAATCTTGTTGAAAGCATACAAAA-CTGAAGG-GAACGA-ACGAAAG 924
Query 1019 ATGAGAATGGATGAGATCATAGAGGAATGCAAGAATTTCTACTAT-GCAGGGCAAGGAAC 1077
||||| || || ||||||||| | ||||||| || ||||| || | | ||| || | |||
Sbjct 925 ATGAGCATCGAAGAGATCATACATGAATGCAGGACTTTCTTCT-TCGGAGGTCACGAAAC 983
Query 1078 TACTTCGA-TTCTATTGACATGGACTACGATGTTACTAAGCTTGCACCAAGGTTGGCAAG 1136
|||| ||| || ||||||||||||| |||||||| || ||||||||||||| |||||| |
Sbjct 984 TACTGCGAATT-TATTGACATGGACAACGATGTTGCTGAGCTTGCACCAAGATTGGCAGG 1042
Query 1137 AGAAACTCAGAGAAGAGGTTTTTAATGAATGTGGTAAAGATAAAATCCC-AGATACAGAC 1195
||||||||||||||||| | || || |||||||||||| | |||| ||| |||| ||||
Sbjct 1043 AGAAACTCAGAGAAGAGATATTCAAAGAATGTGGTAAACAAAAAA-CCCTAGATTCAGAA 1101
Query 1196 ACCTTCTCTAAACTCAAATTGATGAACATGGTGTTGATGGAGTCGCTTCGTCTGTACGGA 1255
|| ||||| ||||||||| |||||||||||||| | |||||||||||||| || ||||||
Sbjct 1102 ACTTTCTCCAAACTCAAACTGATGAACATGGTGATCATGGAGTCGCTTCGACTTTACGGA 1161
Query 1256 CCCGTGATTAAAATTT--CCCGAGAGGCAACAC-AAG-ATATGAAGGTAGGACACTTGGA 1311
|| | | | ||| ||||||| ||| || ||| | | ||| |||| || | ||
Sbjct 1162 CCAACG-TCAGC-TTTGGCCCGAGAAGCATCAGTAAGCACA--AAGCTAGGTGACCTAGA 1217
Query 1312 GAT-CCCAAAGGGCACAAGCATTATCATACCG-TTACTGAAGATGCACAGAGACAAGGCC 1369
||| ||||| |||||||| | | |||| ||| || ||||||||||| || |||||| ||
Sbjct 1218 GATTCCCAA-GGGCACAACCGTCGTCATCCCGCTT-CTGAAGATGCATAGCGACAAGACC 1275
Query 1370 ATATGGGGCGAAGACGCCGAACAA-TTCAATCCCTT-GAGATTCGAAAACGGCATTTCTC 1427
| ||||| |||||||| ||| ||||| ||| | | || | |||||| |||| |
Sbjct 1276 CTTTGGGGATCCGACGCCGA-CAAATTCAA-CCCAACGCGGTTTGCAAACGGTGTTTCCC 1333
Query 1428 AAGCCACCATTCACCCAAACGCTCTCCTCCCGTTCTCAATCGGACCAAGAGCTTGCATTG 1487
|||| ||| |||||||| |||||||| | ||||| ||||||||||||| |||||||
Sbjct 1334 GAGCCGCCAACCACCCAAATGCTCTCCTAGCATTCTCCGTCGGACCAAGAGCCTGCATTG 1393
Query 1488 -CCAAAAACTTTGCCATGGTCGAAGCCAAGACCGTTCTCACTATGATCCTTCAACAGTTC 1546
|||||| ||||| |||| ||||||||||||| || ||||| ||||| ||||||| |||
Sbjct 1394 GCCAAAA-CTTTGTCATGATCGAAGCCAAGACTGTGCTCACCATGATTCTTCAACGGTTT 1452
Query 1547 CAGCTTA---GCCTCTCCCCCGAGTATAAGCACACGCCAGTTGATCACTTCGATCTCTTC 1603
| | ||| |||||| ||||||||||||| |||| || |||||| || | || |||
Sbjct 1453 CGGTTTATTAGCCTCTGTGACGAGTATAAGCACGCGCCGGTGGATCACCTC-A-CTATTC 1510
Query 1604 --CCGCAATACGGCCTACCCGTAATGCTTCACCCTCTCGGA 1642
|| || |||||| |||||||||||||||| ||||| |||
Sbjct 1511 AGCCTCAGTACGGCTTACCCGTAATGCTTCAGCCTCT-GGA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5