BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27720.1
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945268 jgi|Araly1|945268|scaffold_701497.1 2420 0.0
> Ahg945268 jgi|Araly1|945268|scaffold_701497.1
Length=1424
Score = 2420 bits (1310), Expect = 0.0
Identities = 1376/1409 (98%), Gaps = 0/1409 (0%)
Strand=Plus/Plus
Query 152 TGGATCGAACGACAATGGAGATTTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 211
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 7 TGGATCGAACAACAATGGAGGTGTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 66
Query 212 TCGCGGCGTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 271
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCGCGGCTTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 126
Query 272 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 186
Query 332 AGGGTCCATATGTGTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 391
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGGGTCCATATGTTTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 246
Query 392 AGCTTTTCATTGCTGGTTTTGGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAG 451
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 247 AGCTTTTCATTGCTGGTTTTGGCTCCTCTATGTTGTTTGGTACAATCGTTGGATCTCTAG 306
Query 452 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCT 511
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 307 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTACATATTGAGCT 366
Query 512 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 426
Query 572 TTGCTACTTCCCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 631
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTGCTACTTCTCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 486
Query 632 GGGGCTTTGAGCAGCAATGGCTGTCTGTGACATTTTCAAAGGCAGTGTTTTTTGGCAACG 691
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 487 GGGGCTTTGAGCAGCAATGGCTGTCTGTAACATTTTCAAAGGCGGTGTTTTTTGGCAATG 546
Query 692 GTCTCGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTTGATACCTTCTCTCTTG 751
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 547 GTCTTGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTGGATACCTTCTCTCTTG 606
Query 752 GGCCTGTTGCGCCATTTGACGCTGCTGCATGCTTTCTTACTATTGGAATGGCTGTCATTC 811
||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 607 GGCCTGTTGCGCCATTTGATGCTGCTGCGTGCTTTCTTGCTATTGGAATGGCTGTCATTC 666
Query 812 TATCATCATGGACAGAAAACTATGGAGATCCATCAGAAAACAAGGACTTGCTTACCCAGT 871
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 667 TATCATCATGGACAGAAAACTATGGAGATCCTTCAGAAAACAAGGACTTGCTTACCCAGT 726
Query 872 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTATTGGGTGCTATCC 931
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 727 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTGTTGGGTGCCATCC 786
Query 932 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGTC 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 787 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGCC 846
Query 992 CGAACGATGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTAGCTTCGATGC 1051
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 847 CGAACGAGGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTGGCTTCGATGC 906
Query 1052 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGTTCAACTCCCAAAGTAGAGAGCTACA 1111
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 907 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGCTCAACTCCCAAAGTAGAGAGCTACA 966
Query 1112 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1026
Query 1172 TCATAGCACCTTCCAAGGTGAAAGGTGGAGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1231
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1027 TCATAGCACCTTCCAAGGTGAAAGGTGGGGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1086
Query 1232 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGACTGTTTTGGCCATCCATAATGAAGATGA 1291
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1087 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGATTGTTTTGGCCATCCATTATGAAGATGA 1146
Query 1292 GATCCCAATACATCCCAGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1351
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GATCCCAATACATCCCTGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1206
Query 1352 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1266
Query 1412 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGA 1471
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1267 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTGCAAAGGCGGCTCATGATGA 1326
Query 1472 TTGTTGACAAACCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1531
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TTGTTGACAAGCCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1386
Query 1532 ATCCCCTCAACATATGATGAATTAACTAT 1560
||||||| |||||||||||||| ||||||
Sbjct 1387 ATCCCCTTAACATATGATGAATAAACTAT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69133794675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5