BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27730.1
Length=2538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492011 jgi|Araly1|492011|fgenesh2_kg.7__1444__AT4G27730.1 3862 0.0
Ahg331706 jgi|Araly1|331706|fgenesh1_pm.C_scaffold_8001049 1552 0.0
Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745 780 0.0
> Ahg492011 jgi|Araly1|492011|fgenesh2_kg.7__1444__AT4G27730.1
Length=2466
Score = 3862 bits (2091), Expect = 0.0
Identities = 2315/2425 (95%), Gaps = 7/2425 (0%)
Strand=Plus/Plus
Query 96 CACTCTTCTAAAACGATGGGAGAGATAGCAACAGAGTTCACGCCGGTTATGGATGATGAT 155
|||| ||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 48 CACTTTTCAAAAACGATGGGAGAGATAGCAACAGAGTTCACGGCGGTTAT-G--GATGAT 104
Query 156 GATGACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAGACCGACGATTCAACT 215
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 105 GATGACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAAACCGACGATTCATCT 164
Query 216 TTACCGGTTTTAACATTTCGGATGTGGGTTCTTGGTATAGGCGCGTGCATTGTACTCTCC 275
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 165 TTACCGGTTCTCACATTCCGGATGTGGGTTCTTGGTATAGGCGCGTGCATTGTACTCT-C 223
Query 276 TTT-ATCAACCAGTTTTTCTGGTACAGAACGATGCCGTTGAGTATCACCGGAATCTCCGC 334
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 224 TTTCATCAACCAGTTTTTCTGGTACAGAACGATGCCGTTGAGTGTCACCGGAATCTGCGC 283
Query 335 TCAGATCGCCGTCGTGCCGCTTGGTCATCTCATGGCGAGAGTGCTTCCGACAAAAAGATT 394
||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||
Sbjct 284 TCAGATCGCCGTCGTGCCGATTGGACATCTCATGGCGAGGGTGCTTCCGACAAGGAGATT 343
Query 395 CTTGGAAGGTACGAGGTTTCAGTTTACCTTAAACCCGGGTGCCTTCAACGTCAAGGAACA 454
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 344 CTTGGAAGGTACGAGGTTTCAGTTCACCTTAAACCCAGGTGCCTTCAACGTCAAGGAACA 403
Query 455 TGTTCTGATAACTATCTTTGCAAATTCCGGCGCCGGCTCTGTTTACGCTACTCACATACT 514
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 404 TGTTCTGATAACCATCTTTGCAAATTCCGGCGCCGGCTCCGTTTACGCTACTCATATACT 463
Query 515 TAGTGCTATTAAGCTTTACTACAAACGTTCTCTTCCTTTCCTCCCTGCATTTCTCGTCAT 574
||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||
Sbjct 464 TAGTGCTATTAAGCTTTACTATAAACGTCCTCTTCCTTTCCTCCCAGCGTTTCTCGTCAT 523
Query 575 GATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTCAGGAAACACCTTGTTGA 634
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 524 GATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTTAGGAAACACCTTGTTGA 583
Query 635 GCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCGTTACA 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 584 GCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCCTTGCA 643
Query 695 CGAGAAAGAAAAGAAATCAAGAGGAGGCATGAGTAGAACTCAATTCTTCTTAATCGTCCT 754
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 644 CGAGAAAGAAAAGAAATCTAGAGGAGGCATGAGTCGAACACAATTCTTCTTAATCGTCCT 703
Query 755 CGTAGCTAGCTTTGCTTACTACATCTTTCCTGGTTATCTTTTCACCATGTTAACATCAAT 814
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 704 CGTAGCTAGCTTTGCTTACTACATCTTTCCTGGTTATCTATTCACCATGTTAACATCAAT 763
Query 815 CTCATGGGTCTGTTGGCTCAATCCCAAATCAATTCTGGTAAACCAACTCGGTTCAGGTGA 874
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CTCATGGGTTTGCTGGCTTAATCCCAAATCAATTCTGGTAAACCAACTCGGTTCAGGTGA 823
Query 875 ACATGGTCTTGGCATTGGTTCCATTGGTTTTGATTGGGTCACTATTAGTGCTTATCTTGG 934
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 824 ACATGGTCTTGGTATTGGTTCCATTGGTTTTGATTGGGTCACCATTAGTGCTTATCTTGG 883
Query 935 AAGCCCTTTAGCTAGTCCTTTGTTCGCTTCCGTCAATGTAGCCATTGGTTTCGTGCTGGT 994
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 884 AAGCCCTTTAGCTAGTCCATTGTTCGCTTCCGTCAATGTAGCCATCGGTTTCGTGCTGGT 943
Query 995 TATGTATATCGTCACGCCTGTTTGTTACTGGCTTAACATTTATGATGCCAAGACCTTCCC 1054
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 944 TATGTATATTGTCACGCCTGTTTGTTACTGGCTTAACATTTATGACGCCAAGACCTTCCC 1003
Query 1055 TATCTTCTCTAGTCAGCTCTTCATGGGGAATGGCTCACGTTATGATGTTTTGAGCATTAT 1114
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1004 TATCTTCTCTAGCCAGCTCTTCATGGGTAATGGCTCACGTTATGATGTGTTGAGCATTAT 1063
Query 1115 TGATAGCAAATTCCATCTTGACCGTGTGGTTTACTCTAGGACCGGGTCCATCAATATGAG 1174
||||||||| |||||||||||||| | |||||||||||||||||| ||||| || |||||
Sbjct 1064 TGATAGCAAGTTCCATCTTGACCGGGCGGTTTACTCTAGGACCGGCTCCATTAACATGAG 1123
Query 1175 CACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACATTGTCTGCCACCATTGTCCA 1234
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1124 CACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACGTTGTCTGCCACCATTGTCCA 1183
Query 1235 TGTTTTAGTCTTCAACGGAAGTGACTTGTGGAAGCAGACAAGAGGGGCGTTTCAGAAGAA 1294
||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |
Sbjct 1184 TGTCTTAGTCTTCAACGGAAGTGACTTGTGGAAACAGACAAGAGGGGCCTTTAAAAAGGA 1243
Query 1295 TAAGAAAATGGATATACACACGAGAATCATGAAGAAAAACTACAGGGAAGTTCCATTGTG 1354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TAAGAAAATGGATATACACACAAGAATCATGAAGAAAAACTACAGGGAAGTTCCATTGTG 1303
Query 1355 GTGGTTTTTGGTAATCCTTTTACTGAATATCGCGCTTATCATGTTCATCTCCGTGCACTA 1414
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1304 GTGGTTTTTGGTCATCCTTTTACTGAATATCGCGCTCATCATGTTCATCTCCGTGCACTA 1363
Query 1415 CAACGCTACTGTGCAGCTTCCTTGGTGGGGAGTGTTACTTGCTTGTGCCATTGCCATCAG 1474
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CAACGCGACCGTGCAGCTTCCTTGGTGGGGAGTGTTACTTGCTTGTGCCATTGCCATCTC 1423
Query 1475 TTTCACTCCTTTGATCGGTGTCATAGCTGCCACCACTAATCAGGCACCGGGATTGAATAT 1534
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1424 TTTCACTCCTTTGATCGGTGTCATAGCTGCTACCACTAATCAGGCACCGGGTTTGAACAT 1483
Query 1535 CATAACAGAGTATGTTATCGGGTATATCTACCCGGAACGTCCTGTTGCAAACATGTGTTT 1594
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1484 CATAACCGAGTATGTTATCGGGTATATATACCCGGAACGTCCTGTTGCCAACATGTGTTT 1543
Query 1595 CAAGGTCTATGGATACATTAGTATGACTCAAGCGCTAACTTTCATTTCCGACTTCAAGCT 1654
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1544 CAAGGTCTATGGATACATTAGTATGACTCAAGCGCTAACTTTCATTTCCGATTTCAAGCT 1603
Query 1655 TGGTCATTACATGAAGATCCCGCCTAGATCCATGTTCATGGCTCAGGTGGCTGGGACACT 1714
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1604 TGGTCATTACATGAAGATCCCGCCTAGATCCATGTTCATGGCTCAGGTGTTTGGGACTCT 1663
Query 1715 TGTGGCGGTGGTTGTGTACACAGGAACAGCCTGGTGGTTAATGGAAGAGATTCCTCATCT 1774
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1664 TGTGGCGGTTGTTGTTTACACAGGAACAGCTTGGTGGTTAATGGAAGAGATTCCTCATCT 1723
Query 1775 TTGTGATACATCCTTGCTTCCTTCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTT 1834
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 CTGTGACACGGCCTTGCTTCCTTCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTT 1783
Query 1835 CTTTGACGCCTCTGTGATTTGGGGACTAGTGGGACCACGCAGGGTGTTTGGAGACCTTGG 1894
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1784 CTTTGACGCCTCTGTGATTTGGGGACTAGTGGGACCACGTAGGGTGTTTGGAGACCTTGG 1843
Query 1895 AGAATACTCAAATGTCAACTGGTTCTTCCTCGTTGGAGCCATAGCTCCACTCTTAGTTTG 1954
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1844 AGAATACTCAAATGTCAACTGGTTCTTCCTCGTCGGAGCCATAGCTCCACTCTTAGTTTG 1903
Query 1955 GCTAGCCACAAAGATGTTTCCGGCTCAGACATGGATCGCCAAGATTCATATCCCTGTCCT 2014
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1904 GCTAGCCACAAAGATGTTCCCGGCTCAGACATGGATCTCCAAGATTCATATCCCTGTTCT 1963
Query 2015 TGTGGGAGCCACCGCAATGATGCCACCAGCAACAGCAGTTAACTTCACTAGTTGGCTCAT 2074
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1964 TGTGGGAGCCACCGCAATGATGCCACCAGCAACAGCAGTTAACTTCACCAGCTGGCTCAT 2023
Query 2075 CGTCGCATTCATCTTTGGCCACTTCATCTTCAAGTACAGAAGAGTGTGGTGGACCAAGTA 2134
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||
Sbjct 2024 CGTCGCATTCATCTTTGGCCACTTCATTTTCAAGTACAGGAGAGAGTGGTGGACGAAGTA 2083
Query 2135 TAACTATGTGTTGTCTGGTGGTTTAGATGCTGGCTCTGCTTTTATGACCATACTTCTGTT 2194
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2084 TAACTATGTGTTGTCTGGTGGTTTAGACGCTGGCTCAGCTTTTATGACCATACTTCTGTT 2143
Query 2195 TCTAGCACTCGGACGAAAAGGAATTGAAGTGCAGTGGTGGGGAAATTCCGGCGACCGAGA 2254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 TCTGGCACTCGGACGAAAAGGAATTGAAGTGCAGTGGTGGGGAAATTCCGGCGACCGAGA 2203
Query 2255 TACATGTCCCTTAGCTTCTTGTCCAACTGCTAAAGGTGTTGTCGTCAAAGGCTGTCCCGT 2314
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 TACATGTCCATTAGCTTCTTGTCCAACTGCTAAAGGTGTTGTCGTCAAAGGCTGTCCCGT 2263
Query 2315 CTTCTAGCTCATGAGTCATGAGACAAAAGCATATACCAAGTGCTTTGTACAGAACACACA 2374
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 CTTCTAGCTAATGAGTCATGAGACAAAAGCATATACCAAGTGCTTTGTACAGAACACACA 2323
Query 2375 GCAAACTGATAATTGTAATTCTCGGAAATGTCTTTACTCTCCAAGAACTATATCTTTTGT 2434
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2324 GCAAAATGATAATTGTAATTCTCGGAAATGTCTTTACTCTCCAAGAACTATATCTTT-GT 2382
Query 2435 GATAGCTTTAAAACTAGGTACTATCCTGTTCTTTGACTGAACACAAATGCTAGTGATTCT 2494
||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2383 GATAGCTTTTAA-CTAGGTACTATCCTGTTCTATGACAGAACACAAATGCTAGTGATTCT 2441
Query 2495 ATATGTGGTTCCTTAAAATGATTTT 2519
|| |||| ||||||| |||||||||
Sbjct 2442 ATTTGTGTTTCCTTATAATGATTTT 2466
> Ahg331706 jgi|Araly1|331706|fgenesh1_pm.C_scaffold_8001049
Length=2226
Score = 1552 bits (840), Expect = 0.0
Identities = 1712/2129 (80%), Gaps = 76/2129 (4%)
Strand=Plus/Plus
Query 149 TGATGATGAT-GACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAGACCGACG 207
||||||| | ||||||||||| || |||||| ||||| || || || || ||||| |
Sbjct 54 TGATGAT-CTAGACCGGTGCGTGGTGGAGGAGGTTGAGCTAACCGTTCCAAAAACCGATG 112
Query 208 ATTCAACTTTACCGGTTTTAACATTTCGGATGTGG-GTTCTTGGTATAGGCGCGTGCATT 266
|| |||| ||||||||| | || ||| | |||||| || | ||| | || ||||| ||
Sbjct 113 ATCCAACGTTACCGGTTCTCACTTTTAGAATGTGGACTT-TAGGTCTTGGTGCGTGTATC 171
Query 267 GTACTCTCCTTTATCAACCAGTTTTTCTGGTACAGAAC-GATGCCGTTGAGTATCACCGG 325
||||||| || || |||||||||||||||||||| || ||||||||| | || | |||
Sbjct 172 ATACTCTCGTTCATAAACCAGTTTTTCTGGTACAG-ACAGATGCCGTTAACCATTAGCGG 230
Query 326 AATCTCCGCTCAGATCGCCGTCGTGCCGCTTGGTCATCTCATGGCGAGAGTGCTTCCGAC 385
|||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 231 AATCTCGGCTCAGATCGCGGTCGTGCCGCTTGGTCACCTGATGGCTAGAGTGCTTCCGAC 290
Query 386 AA-AAAGATTCTTGGAAGGTA-CGAGGTTTCAGTTTACCTTAAACCCGGGTGCC-TTCAA 442
|| | | ||||||||||| | | | || ||||| | | || || ||| || || ||
Sbjct 291 AAGGATG-TTCTTGGAAGG-ATCAAAGTGGGAGTTTTGCATGAATCCAGGT-CCTTTTAA 347
Query 443 CGTCAAGGAACATGTTCTGATAACTATCTTT-GCAAATTCCGGCGCCGGCTCTGTTTACG 501
||||||||||||||| |||| || || ||| || ||||| || || || | ||||| |
Sbjct 348 TGTCAAGGAACATGTTTTGATCACGAT-TTTCGCTAATTCGGGAGCTGGAACGGTTTATG 406
Query 502 CTACTCACATACTTAGTGCTATTAAGCTTTACTACAA-ACGTTCTCTTCC-TTTCCTCCC 559
| ||||| ||||||||||| |||||||| || || || | | |||||||| ||| || ||
Sbjct 407 CGACTCATATACTTAGTGCAATTAAGCTCTATTATAAGA-GATCTCTTCCGTTT-CTACC 464
Query 560 TGCATTTCTCG-TCATGATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTCA 618
|| ||||| | | |||||||| |||||| |||| |||||||| ||||||||||| |||
Sbjct 465 GGCTTTTCT-GCTTATGATCACTACTCAGTTTCTCGGATTTGGGTGGGCTGGTCTATTCC 523
Query 619 GGAAACACCTTGTTGAGCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTC 678
| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 524 GTAAGCACCTTGTTGAGCCTGGTGAAATGTGGTGGCCAAGCAATCTAGTTCAAGTGTCTC 583
Query 679 TCTTTGGTGCGTTACACGAGAAAGAAAAGAA-ATCAAGAGGAGGCATGAGTAGAACTC-A 736
|||| |||| || |||||||| |||||||| | ||| |||||||||| ||| || |
Sbjct 584 TCTTCAGTGCCTTGCACGAGAAGGAAAAGAAGAAAAAG-GGAGGCATGACCCGAA-TCCA 641
Query 737 ATTCTTCTTAATCGTCCTCGT-AGCTAGCTTT-GCTTACTACAT-CTTTCCTGGTTATCT 793
||||||| | || ||||| || | | || ||| || ||||| || || || ||||||||
Sbjct 642 ATTCTTCCTCATTGTCCTTGTGACC-AG-TTTCGCATACTATATTCTCCCC-GGTTATCT 698
Query 794 TTTCACCATGTTAACATCAATCTCATGGGTCTGTTGGCTCAATCCCAAATCAATTCTGG- 852
||||| ||| |||| || |||||||||||||||||||| | ||||||||| || |||
Sbjct 699 ATTCACAATGATAACTTCCATCTCATGGGTCTGTTGGCTTAGTCCCAAATCGGTTTTGGC 758
Query 853 TAAACCAACTCGGTTCAGGTGAACATGGTCTTGGCATTGGTTCCATTGGTTTTGATTGGG 912
| | ||||||||||||||||||||| |||||||| ||||| | |||||| |||| ||||
Sbjct 759 TCA-CCAACTCGGTTCAGGTGAACAAGGTCTTGGTATTGGCGCAATTGGTATTGACTGGG 817
Query 913 -TCACTATTAG-TGCTTATCTTGGAAGCCCTTTAGCTAGTCCTTTGTTCGCTTCCGTCAA 970
| || ||||| | |||| ||||| ||||| | || ||||| || |||||| || ||||
Sbjct 818 CT-ACAATTAGCT-CTTACCTTGGTAGCCCACTCGCGAGTCCCTTATTCGCTACCATCAA 875
Query 971 TGTAGCCATTGGTTTCGTGCTGGTTATGTATATCGTCACGCCTG-TTTGTTACTGGCTTA 1029
|||| |||||||||| ||| || | |||||| ||| ||| || | |||| || ||||| |
Sbjct 876 TGTAACCATTGGTTTTGTGGTGATCATGTATGTCGCCACTCC-GATTTGCTATTGGCTAA 934
Query 1030 ACATTTATGATGCCAAGACCT-TCCCTATCTTCTCTAGTCAGCTCTTCATGGGGAATGGC 1088
| ||||| | ||||| || | |||| |||||||||||| ||| |||||||| ||||||
Sbjct 935 ATATTTACAAAGCCAAAACATATCCC-ATCTTCTCTAGTGGGCTTTTCATGGGCAATGGC 993
Query 1089 TCA-CGTTATGATGTTTTGAGCATTATTGATA-GCAAATTCCATCTTGACCGTGTGGTTT 1146
|| | | |||||||||| ||||| ||||||| | || || ||||| ||||| | | | |
Sbjct 994 TCGTCCT-ATGATGTTTTAAGCATCATTGATAAG-AAGTTTCATCTCGACCGAGAGATCT 1051
Query 1147 ACT-CTAGGACCGGGTCC-ATCAATATGAGCACCTTCTTTGCTGTTACTTATGGTCTCGG 1204
| | | | ||| || ||| ||| |||||||||| ||||||||||| || |||||||| ||
Sbjct 1052 A-TGCAAAGACTGG-TCCTATCCATATGAGCACTTTCTTTGCTGTGACATATGGTCTTGG 1109
Query 1205 GTTTGCTACATTGTCTGCCACCATTGTCCATGTTTTAGTCTTCAACGGAAGTGACTTGTG 1264
|||||||| ||||| || || ||||||||||||||| ||||||||||||| || || ||
Sbjct 1110 ATTTGCTACTTTGTCCGCAACTATTGTCCATGTTTTACTCTTCAACGGAAGGGATTTATG 1169
Query 1265 GAAGCAGACAAGAGGGGCGTTTCAGAAGAATAAGAAAATGGATATACACACGAGAATCAT 1324
||| || |||||||| || ||||||| ||| |||||||||||| ||||| ||||||||||
Sbjct 1170 GAAACAAACAAGAGGTGCTTTTCAGAGGAACAAGAAAATGGATTTACACGCGAGAATCAT 1229
Query 1325 GAAGAAAAACTACAGGGAAGTTCC-ATTGTGGTGGTTTT-TGGTAATCCTTTTACTGAAT 1382
|||||||||||| || |||||||| || ||||||||||| || | ||||| |||| ||
Sbjct 1230 GAAGAAAAACTATAGAGAAGTTCCCAT-GTGGTGGTTTTATG-TGATCCTCGTACTCAAC 1287
Query 1383 ATCGCGCTTATCATGTTCATCTCCGTGC-ACTACAACGCTACTGTGCAGCTTCCTTGGTG 1441
|| ||||| |||||||||||||| | | ||||||| || || |||||||| ||||||||
Sbjct 1288 ATTGCGCTCATCATGTTCATCTCTTT-CTACTACAATGCAACCGTGCAGCTACCTTGGTG 1346
Query 1442 GGGAGTGTTACTTGCTTGTGCCATTGCCATCAGT-TTCACTCCT-TTGATCGGTGTCATA 1499
||||||||| || |||||||||||||| || | |||||||| || |||||||| ||
Sbjct 1347 GGGAGTGTTGCTAGCTTGTGCCATTGCTGTCT-TCTTCACTCCGCTT-ATCGGTGTTATC 1404
Query 1500 GCTGCCACCACTAATCAGGCACCGGGATTGAATATCATAACAGAGTATGTTATCGGGTAT 1559
|| |||||||||||||||| |||||| ||||| |||| || || ||||| |||||||||
Sbjct 1405 GCCGCCACCACTAATCAGGAACCGGGTTTGAACGTCATTACGGAATATGTAATCGGGTAT 1464
Query 1560 ATCTACCCGGAACGTCCTGTTGCAAACATGTGTTTCAAGGTCTATGGATACATTAGTATG 1619
|||| || |||||||| ||||| |||||||| ||||| || ||||||||||| || |||
Sbjct 1465 CTCTATCCAGAACGTCCGGTTGCGAACATGTGCTTCAAAGTGTATGGATACATCAGCATG 1524
Query 1620 ACTCAAGCGCTAACTTTCATTTCC--GACTTCAAGCTTGGTCAT-TACATGAAGATCCCG 1676
||||| || || || ||||| || |||||||| || |||| | ||||||||||| ||
Sbjct 1525 ACTCAGGCTCTGACATTCAT--CCAAGACTTCAAACTCGGTC-TCTACATGAAGATTCCT 1581
Query 1677 CCTAGATCCATGTTCATGGCTCAGGTGGCTGGGACACTTGTGGCGGTGGTTGTGTACACA 1736
|||||| |||||||||||| ||||||| |||||| |||||| | ||| | |||||||||
Sbjct 1582 CCTAGAAGCATGTTCATGGCACAGGTGGTTGGGACGCTTGTGTCTGTGATAGTGTACACA 1641
Query 1737 GGAACAGCCTGGTGGTTAATGGAAGAGATTCCTCATCTTTGTGATACATCCTTGCTTCCT 1796
||||| || ||||||||||||| ||| ||||||||||| ||||| | ||| |||||||||
Sbjct 1642 GGAACTGCTTGGTGGTTAATGGTAGACATTCCTCATCTATGTGACAAATCTTTGCTTCCT 1701
Query 1797 TCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTTCTTTGACGCCTCTGTGATTTGG 1856
|||| ||| ||||||| ||||| |||||||| || |||||||| || || |||||||||
Sbjct 1702 CCAGATAGCGAATGGACATGTCCGATGGACCGTGTCTTCTTTGATGCTTCGGTGATTTGG 1761
Query 1857 GGACTAGTGGGACCACGCAGGGTGTTTGGAGACCTTGG-AGAATACTCAAATGTCAACTG 1915
||||| ||||||||||| || ||||||| ||| |||| ||||||| || | |||||
Sbjct 1762 GGACTTGTGGGACCACGTAGAATGTTTGGTGAC-TTGGGAGAATACGCAGCCATAAACTG 1820
Query 1916 GTTCTTCCTCGTTGGAGCCATAGCTCCACTCTTAGTTTGGCTAGCCAC-AAAGATGTTTC 1974
|||||||||||| || || || ||||| |||| || |||||||| || |||| |||||
Sbjct 1821 GTTCTTCCTCGTAGGTGCAATTGCTCCTTTCTTCGTCTGGCTAGCGACCAAAGC-GTTTC 1879
Query 1975 CGGCTCAGACATGGATCGCCAAGATTCATATCCCTGTCCT-TGTGGGAGCCACCGCAATG 2033
| ||||| | ||||||| | ||||||||| | || || | | | ||||| ||| | |||
Sbjct 1880 CAGCTCATAAATGGATCTCGAAGATTCATTTTCCGGTAATCT-TAGGAGCAACCTCGATG 1938
Query 2034 ATGCCACCAGCAACAGCAGTTAACTTCACTAGTTGGCT-CATCGTCGCATTCATCTTTGG 2092
|||||||| || | |||||||||||||| |||||| | |||||| ||||| | || ||
Sbjct 1939 ATGCCACCCGCGATGGCAGTTAACTTCACGAGTTGG-TGCATCGTGGCATTTGTGTTCGG 1997
Query 2093 CCACTTCATCTTCAAGTACA-GAAGAGTGTGGTGGACCAAGTATAACTATGTGTTGTCTG 2151
|||||| | || ||||||| || || ||||||||| ||||||||||| || ||||| |
Sbjct 1998 ACACTTCTTGTTTAAGTACAAGA-GACAGTGGTGGACAAAGTATAACTACGTTTTGTCGG 2056
Query 2152 GTGGTTTAGATGCTGGCTCTGCTTTTATGACCATACTTCTGTTTCTAG-CACTCGGACGA 2210
|||||||||| || || |||| |||||||| ||||| | || || | | || |||||
Sbjct 2057 GTGGTTTAGACGCGGGAACTGCGTTTATGACAATACTGATATTCCT-GTCGCTTGGACGC 2115
Query 2211 AAAGGAATTGAAGTGCAGTGGTGGGGAAA 2239
|||||||||| | || ||||||||||||
Sbjct 2116 AAAGGAATTGGATTGTTGTGGTGGGGAAA 2144
> Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745
Length=2220
Score = 780 bits (422), Expect = 0.0
Identities = 1639/2208 (74%), Gaps = 158/2208 (7%)
Strand=Plus/Plus
Query 189 ACTGTACCCAAGACCGACGATTCAACTTTACCG--GTTTTAACATTTCGGATGTGGGTTC 246
||||| ||||| ||||||||| |||||| |||| | || |||||| ||||||||||||
Sbjct 94 ACTGTGCCCAAAACCGACGATCCAACTTCACCGACG-GTT-ACATTTAGGATGTGGGTTC 151
Query 247 TTGGTA-TAGGCGCGTGCATTGTACTCTCCTTTATCAACCAGTTTTTCTGGTACAGAA-C 304
|||| | || |||| || || | | || ||| | |||||||||||||||||||||| |
Sbjct 152 TTGGCATTA-GCGCTTGTGTTCTTTTGTCATTTCTAAACCAGTTTTTCTGGTACAGAACC 210
Query 305 GATGCCGTTGAGTATCACCGGAATCTCCGCTCAGATCGCCGTCGTGCCGC-TTGGTCATC 363
|| || ||| ||| || | || |||||||| || || || || | |||||||||
Sbjct 211 AAT-CCTTTGTCCATCTCCTCTGTTTCGGCTCAGATTGCTGTTGTTCC-CATTGGTCATC 268
Query 364 TCATGGCGAGAGTGCTTCCGACAAAAAGATTCTTGGAAGGTACGAGGT-TTCAGTTT-AC 421
||||||| ||||| ||||| |||| |||||||| ||||| ||||||| || ||| ||
Sbjct 269 TCATGGCTAGAGTTCTTCCCACAAGGAGATTCTTCGAAGGGACGAGGTGGTC--TTTCAC 326
Query 422 CTTAAACCCGGGTGCC-TTCAACGT--CAAGGAACATGTTCTGATAACTATCTTTGCAAA 478
| || || ||| || || | || ||| ||||||||||| |||||| | ||||||||
Sbjct 327 AATGAATCCTGGT-CCGTT-TA-GTACCAAAGAACATGTTCTTATAACTGTGTTTGCAAA 383
Query 479 TTCCGGCGCCGGCTCTGTTTACGCTACTCACATACTTAGTGCTATTAAGCTTTACTACAA 538
|| ||| | || ||||| ||||||| ||| || ||||||||| |||||||||| |||||
Sbjct 384 CTCAGGCTCTGGGTCTGTATACGCTAGTCATATTCTTAGTGCTGTTAAGCTTTATTACAA 443
Query 539 -ACGTTCTCTTCCTTTCCTCCCTGCATTT-CTCGTCATGATCACCACTCAGATTCTT-GG 595
| | ||| |||| | ||||| ||| ||||| ||||||||||||||| | || ||
Sbjct 444 GA-GAAGGCTTGATTTCTTACCTGC-TTTGCTCGTTATGATCACCACTCAG-GTATTGGG 500
Query 596 ATTTGGTTGGGCTGGTCTCT-TCAGGAAACACCTT-GTTGAGCCTGGTGAAATGTGGTGG 653
|||||||||||||||| | | | |||||||| || ||||| ||||||||||||||||||
Sbjct 501 ATTTGGTTGGGCTGGTTTGTAT-AGGAAACA-TTTAGTTGATCCTGGTGAAATGTGGTGG 558
Query 654 CCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCGTTACACGAGAAAGAAAAGAAATCA 713
|||||||||||||||||||| |||||||| | || || ||||||||||| || ||||||
Sbjct 559 CCAAGCAATCTTGTTCAAGTGTCTCTCTTCAGAGCATTGCACGAGAAAGAGAACAAATCA 618
Query 714 AGA-GGAGGCATGAGTAGAACTCAATTCTTCT-TAATCGTC-CTCGT-AGCTAGCTT-TG 768
| | || || || ||||||| ||| ||||| | | ||| | ||| | | ||||||| |
Sbjct 619 AAATGG-GGAATTAGTAGAAATCAGTTCTT-TGTCATCA-CGCTCATCA-CTAGCTTCTC 674
Query 769 CTTACTA-CATCTTTCCTGGTTATCTTTTCACCATGTTAAC-ATCAATCTCATGGGTCTG 826
|| | || | || | ||||||||||| ||||| | ||||| | | |||| ||| | ||
Sbjct 675 CT-ATTATC-TCCTACCTGGTTATCTCTTCACGGTCTTAACCACCG-TCTCTTGGTTATG 731
Query 827 TTGGCTCAATCCC-AAATCAATTCTGGTAAACCAACTCGGTTCAGG-TGAACATGGTCTT 884
|||| | | ||| ||||| ||||| |||||||| || |||||||| | | | ||||||
Sbjct 732 TTGGATTAG-CCCTAAATCGATTCTAGTAAACCAGCTTGGTTCAGGGTCAGC-TGGTCTA 789
Query 885 GGCATTGGTTCCATTGGTTTTGATTGGGTCA-CTATTA-GTGCTTATCTTGGAAGCCCTT 942
|| ||||||||| ||||| | || ||| ||| | || || | ||||||||||||||
Sbjct 790 GGTATTGGTTCCTTTGGTCTGGACTGG-TCAACCATCGCGT-CATATCTTGGAAGCCCAC 847
Query 943 TAGCTAGTCCTTTGTTCGCTTCCGTCAA-TGTAGCCATTGGTTTCGTGCTGGTTATGTAT 1001
| ||||| || || || || || | ||| | | || |||| ||| | || || |||||
Sbjct 848 TCGCTAGCCCATTCTTTGCCTCAG-CAAATATTGCGGTTGGGTTCTTTCTTGTGATGTAC 906
Query 1002 ATCGTCACGCCTGTTTGTTACTGGCTTAACATTTATG-A-TGCCAAGACCTTCCCTATCT 1059
| |||| ||| | ||||||| || | |||| | | |||||| |||||||| ||||
Sbjct 907 GTAATCACACCTCTCTGTTACTATCT-AG-ATTTCTACAATGCCAAAACCTTCCCAATCT 964
Query 1060 TCTCTAGTCAGCTCTTCATGGGGAATGGCTCACGT-TATGATGTTTTGAGCATTATTGAT 1118
||| || | ||||| | | | ||| | | || |||| |||||| || |||
Sbjct 965 ACTCCGGTAAACTCTTTGTAGCCAGTGGGA-AGGAATACAATGTAACGAGCATCATCGAT 1023
Query 1119 AGCAAATT-CCATCTTGACCGTGTGGTTTACTCTAG-GACCGGGTCCA-TCAATATGAGC 1175
|| |||| || || || ||| || |||| | || |||||| ||| || | ||||||
Sbjct 1024 -GCCAATTTCCGCCTCGATCGTAAGGCTTACGC-AGAGACCGGA-CCAGTCCACATGAGC 1080
Query 1176 ACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACATTGTCTGCCACCATTGTCCAT 1235
|| |||||||| || |||||||| ||||| ||||| || |||||||| | |||||||||
Sbjct 1081 ACTTTCTTTGCCGTGACTTATGGACTCGGCTTTGCGACCTTGTCTGCTAGTATTGTCCAT 1140
Query 1236 GTTTTAG-TCTTCAACGG-AAGTGA-CTTGTGGAAGCAGAC-AAGAGGGGCGTTTCAGAA 1291
|| | | | |||||||| || || ||| |||| || || || ||| ||||||| |||
Sbjct 1141 GTCCT-GCTTTTCAACGGCAAA-GATCTT-TGGACTCAAACCAA-AGGAGCGTTTC-GAA 1195
Query 1292 GAAT-AAGAAAATGGATATACACACGA-GAATCATGAAGAAAAACTACAGGGAAGTTCCA 1349
|| ||||||||||||||||| || | || ||||||||| || |||| ||||||||
Sbjct 1196 AAAACAAGAAAATGGATATACATACAAAGA-TCATGAAGAGGAATTACAAAGAAGTTCC- 1253
Query 1350 T-TGTGGTGGTTTTTGGTAATCC-TTTTA-C--TGAATATCGC-GCTTATCATGTTCATC 1403
| | ||||||||| | | || |||| | ||||| | || | |||| | |||||
Sbjct 1254 TCTCTGGTGGTTTCT--T--TCGATTTTCGCCGTGAATCTTGCAG-TTATTGTCTTCATA 1308
Query 1404 TCCGTGCACTACAACG-CTACTG-TGCAGCTTCCTTGGTGGGGAG-TGTTACTTG-CTTG 1459
| | |||| || | | || | | |||||||| |||||||||| | || |||| ||||
Sbjct 1309 TGTATTTACTATAA-GAC-ACAGATTCAGCTTCCATGGTGGGGAGCT-TT-CTTGGCTTG 1364
Query 1460 TGCCATTGCCATCAGT-TTCACTCCTTT-GATCGGTGTCAT-AGCTG-CCACCACTAATC 1515
| || || ||| | ||||||||| | | | ||||| || | || |||| ||||| |
Sbjct 1365 TTTGATAGCTATCT-TCTTCACTCCTCTCGTT-GGTGTGATCA--TGGCCACTACTAACC 1420
Query 1516 AGGCACCGGGAT-TGAATATCATAACAGAGTATGTTATCGGGTATATC-TACCCGGA-AC 1572
|||| ||||| | |||| || || || || || | || |||||| | || || || |
Sbjct 1421 AGGCTCCGGG-TCTGAACATTATCACGGAATACATAATTGGGTATG-CATATCCAGAGA- 1477
Query 1573 GTCCTGTTGCAAACATGTGTTTCAAGGTCT-ATGGATACATTAGTATGACTCAAGCGCTA 1631
| || ||||| ||||| || |||||| || | |||||||| || ||| ||||| | |
Sbjct 1478 GACCAGTTGCTAACATATGCTTCAAGA-CTTACGGATACATCAGCATGTCTCAATCTTTG 1536
Query 1632 ACTTTCATTTCCGACTTCAAGCTTGGT-CATTACATGAAGATCCCGCCTAGATCCATGTT 1690
|||||| | || || || |||||||| | ||||||||||||||| || ||| |||||||
Sbjct 1537 ACTTTCCTCTCTGATTTGAAGCTTGGAAC-TTACATGAAGATCCCACCAAGAACCATGTT 1595
Query 1691 CATGGCTCAGGTGGCTGGGACACTT--GTGGCGGTGGTTGTGTACACAGGAACAGCCTGG 1748
||||| ||||| | |||| ||||| || || || | || ||| || ||||| |||
Sbjct 1596 TATGGCACAGGTTG-TGGG-CACTTTAGTAGCAGTCATCGTTTACGCAATCACAGCTTGG 1653
Query 1749 TGGTTAATGGAAGAGATTCCTCATCTTTGTGATACATC-CTTGCTTCCTTCAG-ACAGCC 1806
||| |||||| || || || |||| |||||||| || || |||||| ||| | || |
Sbjct 1654 TGGCTAATGGCTGAAATCCCAAATCTCTGTGATACTTCTCT-GCTTCCACCAGGA-AGTC 1711
Query 1807 AATGGACTTGTCCCAT-GGACCGCGTTTTCTTTGACGCCTCTGTGATTTGGGGACTAGTG 1865
| ||||||||||| || ||| || || ||||| ||||| || ||||| |||||||| ||
Sbjct 1712 AGTGGACTTGTCC-ATCGGATCGAGTCTTCTTCGACGCATCAGTGATCTGGGGACTTGTA 1770
Query 1866 GGACCACGCAGGGTGTTTGGAGACCTTGGAGAATACTCAAATGTCAACTGGTTCTTCCTC 1925
|||||| | || ||||||| || ||||||||||||||||| | |||||||||||| |
Sbjct 1771 GGACCAAGAAGAATGTTTGGTGATCTTGGAGAATACTCAAACATAAACTGGTTCTTCGTA 1830
Query 1926 GTTGGAGCCATAGCTCCA-CTCTTAGTTTGGCT-AGCCACAAAGA-TGTTTCCGGCTCA- 1981
| || || ||||||||| | || || | || |||||||| || | || || ||
Sbjct 1831 GGAGGTGCAATAGCTCCAGCA-TTGGTCTA-CTTAGCCACAA-GACTCTTCCCAAA-CAA 1886
Query 1982 GACATGGATCGCCAAGATTCATATCCCTGTCCTTGTGGGAGCCACCGCAATGATGCCACC 2041
|| ||||||| | || ||||| |||||||| || || |||||||| || || ||||||||
Sbjct 1887 GAAATGGATCTCAAACATTCACATCCCTGTTCTGGTTGGAGCCACAGCTATAATGCCACC 1946
Query 2042 AGCAACAGCAGTTAACTTCACTAGTTGGCTCATCGTCGCATTCATCTTTGGCCACTTCAT 2101
||| | || ||||||||||| || |||||| | | || || | ||||| || ||| |
Sbjct 1947 AGCTTCTGCGGTTAACTTCACGAGCTGGCTCGTTATGGCGTTTGTGTTTGGACATTTCGT 2006
Query 2102 CTTCAAGTACAGAAGAGTGTGGTGGACCA-AG-TATAACTATGTGT-TGTCTGGTGGTTT 2158
|||||||||||||||| |||||| | | || ||||||||||| | ||||||| || |
Sbjct 2007 GTTCAAGTACAGAAGAGAATGGTGG-C-AGAGATATAACTATGT-TCTGTCTGGAGGAAT 2063
Query 2159 AGATGCTGGCTCTGCTTTTATGACCATACTTCTGTTTCT-AGCACTCGGA-CGAAAAG-G 2215
||||| || ||| || ||| | | ||| ||||||| | | || | | || | | |
Sbjct 2064 GGATGCAGGAACTGGATTCATGTCTGTGCTTTTGTTTCTTA-CGCT-GCAACGTAGTGAG 2121
Query 2216 AATTGA-AGTGCAGTGGTGGGGAAATTCCGGCGACCGAGATACATGTCCC-TTAGCTTCT 2273
| ||| | || | |||||||||||||| || || | | | ||| | || |||
Sbjct 2122 A-TTGCTATTG-ATTGGTGGGGAAATTCTGGTGAA-G-G-T---TGTGCTGTT-GCTAAA 2172
Query 2274 TGTCCAACTGCTAAAGGTGTTGTCGT-CAAAGGCTGTCCCGTCTTCTA 2320
||||||||||||||||||||||| || || || ||||| || |||||
Sbjct 2173 TGTCCAACTGCTAAAGGTGTTGTTGTTCAT-GGTTGTCCTGTTTTCTA 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95682695440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5