BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27745.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328916 jgi|Araly1|328916|fgenesh1_pm.C_scaffold_7001143           603    8e-172


> Ahg328916 jgi|Araly1|328916|fgenesh1_pm.C_scaffold_7001143
Length=447

 Score =  603 bits (326),  Expect = 8e-172
 Identities = 356/371 (96%), Gaps = 0/371 (0%)
 Strand=Plus/Plus

Query  221  GTGAGAACTTGGTTGGAGCAATTGATCACGCCTTGAAAGTGTTTGATAAAATGGCTCAGG  280
            ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  
Sbjct  77   GTGAGGACTTGGTTGGAGCAATTGATCACGCCCTGAAAGTGTTTGATAAAATGGCTCACT  136

Query  281  CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG  196

Query  341  ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTCCTGTTCTCCCACGCAA  400
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  197  ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTTTTGTTCTCCCACGCAA  256

Query  401  TGAACATTGTGGTAGGACCTAAAGAAGACCGGAATCTTCTAACTGGTCTACACACCGTGG  460
            |||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct  257  TGAATATTGTGGTAGGGCCTAAAGAAGACCGGCATCTTCTAACAGGTCTACACACTGTGG  316

Query  461  CTGATATATCTTGTGTTGACTGTAACGAACCATTGGGTTGGAAATACGAGCGAGCTTATG  520
            | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  317  CGGATATATCTTGTGCTGACTGTAATGAACCGTTGGGTTGGAAATACGAGCGAGCTTATG  376

Query  521  AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG  436

Query  581  AGGATTGGTAG  591
            |||||||||||
Sbjct  437  AGGATTGGTAG  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5