BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27745.1 Length=801 Score E Sequences producing significant alignments: (Bits) Value Ahg328916 jgi|Araly1|328916|fgenesh1_pm.C_scaffold_7001143 603 8e-172 > Ahg328916 jgi|Araly1|328916|fgenesh1_pm.C_scaffold_7001143 Length=447 Score = 603 bits (326), Expect = 8e-172 Identities = 356/371 (96%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 221 GTGAGAACTTGGTTGGAGCAATTGATCACGCCTTGAAAGTGTTTGATAAAATGGCTCAGG 280 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 77 GTGAGGACTTGGTTGGAGCAATTGATCACGCCCTGAAAGTGTTTGATAAAATGGCTCACT 136 Query 281 CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG 196 Query 341 ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTCCTGTTCTCCCACGCAA 400 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 197 ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTTTTGTTCTCCCACGCAA 256 Query 401 TGAACATTGTGGTAGGACCTAAAGAAGACCGGAATCTTCTAACTGGTCTACACACCGTGG 460 |||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||| Sbjct 257 TGAATATTGTGGTAGGGCCTAAAGAAGACCGGCATCTTCTAACAGGTCTACACACTGTGG 316 Query 461 CTGATATATCTTGTGTTGACTGTAACGAACCATTGGGTTGGAAATACGAGCGAGCTTATG 520 | ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 317 CGGATATATCTTGTGCTGACTGTAATGAACCGTTGGGTTGGAAATACGAGCGAGCTTATG 376 Query 521 AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG 436 Query 581 AGGATTGGTAG 591 ||||||||||| Sbjct 437 AGGATTGGTAG 447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29583383592 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5