BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27750.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328915 jgi|Araly1|328915|fgenesh1_pm.C_scaffold_7001142 1099 0.0
> Ahg328915 jgi|Araly1|328915|fgenesh1_pm.C_scaffold_7001142
Length=969
Score = 1099 bits (595), Expect = 0.0
Identities = 663/696 (95%), Gaps = 3/696 (0%)
Strand=Plus/Plus
Query 21 ATGTATCTGAAGAGACCGATATGGAGCGATGGCGCGT---CAGCAACGCCGGAGAATCCA 77
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTATCTGAAGAGACCGATATGGAGCGATGGCGCGTCAGCAGCAACGCCGGAGAATCCG 60
Query 78 TCAGAATCGGAGACCGGAGAAGAATCAGACGCGGCGTCGATGGTAGTCGAAGAGCTGGTG 137
|| |||||||||| |||||| || |||||||||||| |||||||||| ||||||||||||
Sbjct 61 TCGGAATCGGAGAACGGAGAGGATTCAGACGCGGCGGCGATGGTAGTTGAAGAGCTGGTG 120
Query 138 ACTTCTCTCAATACACAGAGACTTTACAGGGAGCTGACACTATCCCTCAGGACCGGTTTA 197
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 ACTTCTCTCAATACACAGAGACTTTATAGGGAGCTGACACTATCCCTCAGGACCGGCTTA 180
Query 198 CGCGATGCTTGCGCTGAATTCTCCTTCCTTCGCATCCGTGGTCTTAGATCTCTTCTCAAA 257
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CGCGATGCTTGCGCTGAGTTCTCCTTCCTTCGCATCCGTGGCCTTAGATCTCTTCTCAAA 240
Query 258 ACTCTCCGAACTGTCGCTGATTCAGATTCAATCATTCGTCTCTTCTCTCATACCCAAACC 317
||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 241 ACTCTCCGAACTGTCGCCGATTCAGATTCCATCATCCGCCTCTTCTCTCATACCCAAACC 300
Query 318 ATTTCCGATCTCCAACTGGTTCCGGTGCTTTTTCAACATTCATTGAAAGAAGCGGAGGAT 377
||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 301 ATTTCCGATCTCCAATTGGTTCCGGTGCTTTTTCGACATTCGTTGAAAGAAGCGGAGGAT 360
Query 378 GATAAAGTGACGAGCTTGGATCATATATTCAGTGTGGAGCCGATGAAGATAACAAGTCCT 437
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GATAGAGTGACGAGCTTGGATCATATATTCAGTGTGGAGCCGATGAAGATAACGAGTCCT 420
Query 438 TCTACGGATGCTGAGGTTGCTGTTGCTCTTAGAGTTCTCGAAGGATGCTGCCTTCTCCAT 497
||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 421 TCTACGGATGCTGAGGTCGCGGTTGCACTTAGGGTTCTCGAAGGATGCTGTCTTCTCCAT 480
Query 498 CCTCAGAGCACTGTCCTGGCTCATAAGCATGGTGCAGTCCGCGTAATGATGAATGTATTA 557
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 CCTCAGAGCACTGTTCTGGCTCATAAGCACGGTGCAGTCCGCGTAATGATGAATGTATTA 540
Query 558 TCAACACGAGGAGTACTTGAGCAAGGAGCCTGCTTGGATGCCTTAATCTCAGTATTGCTG 617
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 541 TCAACACGAGGAGTACTTGAGCAAGGGGCCTGCTTGGATGCCTTAATCTCAGTATTGTTG 600
Query 618 GATTCATCAGCAAATCAGGTGGATTTTGGAGCTTGCAATGGCATTGAAGAGGTTGCAATG 677
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GATTCATCAGCAAATCAGGTGGATTTTGGAGCCTGCAATGGCATTGAAGAGGTTGCAATG 660
Query 678 CTCATGCGAGACAAACAAGCTGATGAAAACCTCAGG 713
||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCATGCGAGACAAACAAGCTGATGAAAACCTCAGG 696
Score = 372 bits (201), Expect = 3e-102
Identities = 217/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 712 GGTTAAGATGCGGAGAGTTCTTACTACTGTTAGTTGGACACGTAAATGGGAAGGATCGAT 771
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 743 GGTTAAGATGCGGAGAGTTCTTACTACTGTTAGTTGGACATGTGAATGGGAAGGATCGTT 802
Query 772 CTCCAATAGCGAGTGTAAATGAAGACATCAGGCGCCTCTTGGGTGAAAAATCTGCTTCTT 831
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTCCCATAGCAAGTGTAAATGAAGACATCAGGCGCCTCTTGGGTGAAAAATCTGCTTCTT 862
Query 832 TAATATGGGCGGCGAGTCAATTCGGTTCAACAGGTGATCCTGAACAAAGAATCACGGCGC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 863 TAATATGGGCGGCGAGTCAATTCGGTTCAACAGGTGATCCTGAACAAAGAATCACTGCTC 922
Query 892 TTCATATCCAGGCTGGTAGAGTGCTCGAGTCTCTTGACTTGTACT 936
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 923 TTCATATCCAGGCTGGTAGAGTTCTCGAGTCTCTTGACTTGTACT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5