BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27760.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492007 jgi|Araly1|492007|fgenesh2_kg.7__1440__AT4G27760.1 2233 0.0
Ahg949890 jgi|Araly1|949890|scaffold_801777.1 617 5e-176
> Ahg492007 jgi|Araly1|492007|fgenesh2_kg.7__1440__AT4G27760.1
Length=1391
Score = 2233 bits (1209), Expect = 0.0
Identities = 1341/1403 (96%), Gaps = 16/1403 (1%)
Strand=Plus/Plus
Query 1 GTGAAGCCATAGATATTGACGAAATACACTTTTTGTCTTTTTGTTGCTGTGCAACGTCAT 60
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GTGAAGCCATAGTTTTTGACGAAATACACTTTTTGTC-TTTTGTTGCTGTGCAACGTCAT 59
Query 61 AGATCTAACTCCGGAAGAAGAAGAAGATGAGTGACGAAACGACGTCATCTCCGTCCCCAG 120
|||||||||||| | ||||||||||||||||||||||||| |||| ||| ||
Sbjct 60 AGATCTAACTCC-G--GAAGAAGAAGATGAGTGACGAAACGGCGTCGTCTTTGT------ 110
Query 121 CTCCGGCGAAGAAGAAGCAGAATCTGGGATGGATGGAGTGGATGAGGGGATGGAGCAGTG 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 111 CTCCGGCGAAGAAGAAGCAGAATCTGGGATGGATGGAGTGGATGAGAGGATGGAGCAGTG 170
Query 181 TTTTCGGGGAGATTCTCTTCCAGAGGATCACAGCTTCTCATTTGGAGAATCCTCTTCCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 171 TTTTCGGGGAGATTCTCTTCCAGAGGATCACAGCTTCTCATTTGGAGAACCCTCTTCCTC 230
Query 241 TTCCTTCCGTCAACGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGCCGTG 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 231 TTCCTTCCGTCAATGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGCCGCG 290
Query 301 AAACCGCGAGGCAGCTTGCAGAAGCTGGTGCTCATGTTGTGATGGCCGTAAGGAACACAA 360
| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 291 AGACCGCTAGGCAGCTTGCAGAGGCCGGTGCTCATGTTGTGATGGCCGTAAGGAACACAA 350
Query 361 AGGCGGCTCAGGAGCTGATAC-TGCAATGGCAGAACGAATGGTCTGGTAAAGGTCTCCCA 419
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 351 AGGCGGCTCAGGAGCTGATACAT-CAATGGCAGAACGAATGGTCTGGTAAAGGTCTCCCA 409
Query 420 CTCAATATTGAGGCAATGGAGATTGATCTACTCTCACTGGATTCTGTCGCGAGATTTGCT 479
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 410 CTCAATATTGAGGCAATGGAGATTGATCTTCTCTCACTGGATTCTGTTGCAAGATTTGCC 469
Query 480 GAGGCTTTCAACGCTCGGTTAGGACCTTTGCATGTTCTGATTAACAATGCTGGGATGTTT 539
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 470 GAGGCTTTGAACGCTCGGTTAGGACCTTTGCATGTTTTGATTAACAATGCTGGGATGTTT 529
Query 540 GCTATGGGAGAGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTGAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GCTATGGGAGAGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTGAAT 589
Query 600 CATTTAGCTCCAGCGCTGCTTTCAGTACTTCTTTTGCCGTCTCTGATCCGAGGCTCTCCT 659
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 590 CATTTAGCTCCAGCGCTGCTTTCCGTACTTCTTTTGCCGTCTCTTATCCGAGGCTCTCCT 649
Query 660 AGCCGAATCATTAATGTGAATTCCGTTATGCATAGTGTCGGTTTTGTTGACCCGGATGAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AGCCGAATCATTAATGTGAATTCCGTTATGCATAGTGTCGGTTTTGTTGACCCGGATGAC 709
Query 720 ATGAATGTTGTTTCTGGTAGACGTAAGTACTCAAGCCTTATAGGATACTCAAGCAGCAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGAATGTTGTTTCTGGTAGACGTAAGTACTCAAGCCTTATAGGATACTCAAGCAGCAAG 769
Query 780 CTTGCCCAGATTATGTTTAGTAGCATTCTTTTCAAAAAGCTTCCTCTGGAAACAGGAGTC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTTGCCCAGATTATGTTTAGTAGCATTCTTTTCAAAAAGCTTCCTCTGGAAACAGGAGTT 829
Query 840 AGCGTCGTATGTCTATCCCCTGGTGTTGTCCTAACAAATGTTGCCAGGGATCTATCCAGG 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGCGTCATATGTCTATCCCCTGGTGTTGTCCTAACAAATGTTGCCAGGGATCTATCCAGG 889
Query 900 ATTCTTCAAGCTCTTTACGCAGTGATACCTTATTTCATATTTTCACCCCAAGAAGGTTGT 959
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 890 TTTCTTCAAGCTCTGTACGCTGTGATACCATATTTCATATTTTCACCCCAAGAAGGTTGT 949
Query 960 AGAAGTTCTCTATTCTCGGCCACAGATCCTCAGATTCCAGAGTACTGGGAAACACTAAAA 1019
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 950 AGAAGTTCTCTATTCTCGGCCACAGACCCTCAGATTCCAGAGTATTGGGAAACACTAAAA 1009
Query 1020 AACGATGATTGGCCTGTTTGCCCATTCATCTCTCAAGATTGCCGCCCTGCAAATCCTTCC 1079
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1010 AACGACGATTGGCCTGTTTGCCCATTTATTTCTCAAGATTGCCGCCCTGCAAATCCTTCT 1069
Query 1080 GAAGAAGCACACAACACAGAAACTGCACAGAGAGTGTGGAAAAAGACGTTAGAGCTGGTG 1139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1070 GAAGAAGCACACAACACAGAAACTGCACAGAGAGTGTGGGAAAAGACGTTAGAGCTGGTG 1129
Query 1140 GGTCTTCCTCTCGATGCAGTTGAGAAGCTCATAGAAGGGGAAAATATCCAATGCCGGTAT 1199
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1130 GGTCTTCCTCTCGATGCAGTTGAAAAGCTTATAGAAGGGGAAAATATCCAATGCCGGTAT 1189
Query 1200 GGAGCACAACACGAATAGTCTTTCAAAA--TTACCACAGGTTAAGTGACCCATTACAGAT 1257
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1190 GGAGCACAACACGAATAGTCTTTCAAAAAATTACCACAGGTTAAGTGACCCCTTACAGAT 1249
Query 1258 CAAAGGGTAGGTAATTGAGAAAATATCtttttttt-ttGTTTCCTTGTATTAATCTACAC 1316
||||||||| || ||||||||||| || ||||||| |||||||||||| |||||||||||
Sbjct 1250 CAAAGGGTAAGTTATTGAGAAAAT-TCCTTTTTTTCTTGTTTCCTTGTTTTAATCTACAC 1308
Query 1317 GATACAGTGGGGAATGAATCCCCCAGGCATGTAGTTTGCTTGAGAATGTTTGATTGTTGG 1376
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1309 TATACAGTGGGGAATGAATCCCCCAGGCATGTGGTTTGCTTGAGAATGTTTGATTGTTGG 1368
Query 1377 ATAAAAGTCAAGCTTTAGCTACC 1399
|||||||||||| || |||||||
Sbjct 1369 ATAAAAGTCAAGGTTGAGCTACC 1391
> Ahg949890 jgi|Araly1|949890|scaffold_801777.1
Length=1100
Score = 617 bits (334), Expect = 5e-176
Identities = 815/1042 (78%), Gaps = 53/1042 (5%)
Strand=Plus/Plus
Query 192 ATTCTCTTCCAGAGGATCACAGCTTCTCATTTGGAGAA-TCC-TCTTCCTCTTCCTTCC- 248
||||| || ||||| || | |||||||| || | || ||| | ||| |||||| |||
Sbjct 51 ATTCTTTTGCAGAGAATGATGGCTTCTCACTTACA-AACTCCAT-TTCATCTTCC-TCCT 107
Query 249 GTCAACGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGC-CGTGAAACCGC 307
| ||| || | |||||| ||||||||||||||||||| ||||||||| | || || ||
Sbjct 108 TTGAACCACTTAACTTGCATTGTCACTGGCTCCACCAGTGGCATTGGCTC-CGAGACTGC 166
Query 308 GAGGCAGCTTGCAGAAGCTGGTGCTCATGTTGTGATGGCCGTAAGGAACACAAAGGCGGC 367
|||||||||||||||||||||||||||||||| ||||| || ||||||| ||| || ||
Sbjct 167 TAGGCAGCTTGCAGAAGCTGGTGCTCATGTTGTTATGGCTGTGAGGAACATAAAAGCAGC 226
Query 368 TCAGGAGCTGATACTGCAATGGCAGAACGAA-TGGT---CT-G-G-TAAAGG-TCTCCCA 419
||| |||||||| | |||||||||| | || |||| || | | | | || | |||||
Sbjct 227 TCATGAGCTGATTCAACAATGGCAGACC-AAGTGGTATGCTAGTGGTGAGGGAT-TCCCA 284
Query 420 CTCAATATTGAGGCAATGGAGA-TTGATCTACTCTCACTGGATTCTGTCG-CGAGATTT- 476
|| |||||| |||| ||||| | |||| || ||||| | ||||| |||| | ||||||
Sbjct 285 CTTAATATTCAGGCGATGGA-ACTTGACCTTCTCTCTTTAGATTCCGTCGTC-AGATTTA 342
Query 477 GCTGAGGCTTTCAACGCTCGGTTAGGACCTTTGCATGTTCTGATTAACAATGCTGGGATG 536
|| | |||| ||||| |||||| |||||||||||||||||||||||||| || |||
Sbjct 343 GCA-ATGCTTGGAACGCACGGTTAACCCCTTTGCATGTTCTGATTAACAATGCCGGCATG 401
Query 537 TTTGCTATGGGAGAGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTG 596
||||||||||||| ||| ||||| |||||||| || |||||||| || ||||||||||||
Sbjct 402 TTTGCTATGGGAGGGGCACAAAATTTCTCAGAAGATGGATATGAACAACACATGCAAGTG 461
Query 597 AATCATTTAGCTCCAGCGCTGCTTTCAGTACTTCTTTTGCCGTCTCTGATCCGAGGCTCT 656
|| |||||||||||||| ||||||||| |||| |||||||| || || ||||||| || |
Sbjct 462 AACCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAG-CT-T 519
Query 657 CCT--AGCCGAATCATTAATGTGAATTCCGTTATGCAT-AGTGTCGGTTTTGTTGACCCG 713
|| || |||||||||||||| ||||| ||||||||| | ||| ||||||||||| ||
Sbjct 520 CCCGGAGTCGAATCATTAATGTTAATTCTGTTATGCATTA-TGTTGGTTTTGTTGATCCA 578
Query 714 GATGACATGAATGTTGTTTCTGGTAGACGTAAGTACTCAAGCCTT-ATAGGATACTCAAG 772
|||| ||||||||| ||||||||| ||| |||| |||||| || | |||||| || ||
Sbjct 579 AATGATATGAATGTTATTTCTGGTAAACGAAAGTTTTCAAGC-TTGAGAGGATATTCTAG 637
Query 773 CAGCAAGCTTGCCCAGATTATGTTTAGTAGCATTCTTTTCAAAAAGCTTCCTCTGGAAAC 832
||||| || || ||| ||||||||| | ||||||||||||| || ||| |||||||
Sbjct 638 TAGCAAACTCGCTCAGGTTATGTTTAACAATGTTCTTTTCAAAAAACTGCCTTTGGAAAC 697
Query 833 AGG-AGTCAGCGTCGTATGTCTATCCCCTGGTGTTGTCCTAACAAATGTTGCCAGGGATC 891
|| | | |||||||| ||| |||| ||||||| ||||| ||| || ||| | || ||||
Sbjct 698 CGGCATT-AGCGTCGTTTGTTTATCTCCTGGTGCTGTCCAAACTAACGTTACTAGAGATC 756
Query 892 TATCCAGGATTCTTC-AAGCTCTTTACGCAGTGATACCTTATTTCATATTTTCACCCCAA 950
| |||| || | || ||| ||||||| | | | || |||||||| ||||| || |||
Sbjct 757 T-TCCAAGAGTGATCCAAGATCTTTACTCTGCCCTGCCATATTTCATCTTTTCGCCACAA 815
Query 951 GAAGGTTGTAGAAGTTCTCTATTCTCGGCCACAGATCCTCAGATTCCAGAGTACTGGGAA 1010
|||||||||||||| || | |||||||| ||| |||||||||||||| || | | ||
Sbjct 816 GAAGGTTGTAGAAGCTCGATTTTCTCGGCGACAAATCCTCAGATTCCACAGCATTACCAA 875
Query 1011 ACA-CTAAAAAACGA-TGATTGGCCTGTTTGCCCATTCAT-C-T--CTCAAGATTGCCGC 1064
| | |||| || ||| ||| | |||||| |||| || | | ||||| |||||
Sbjct 876 A-AGCTAAGAA-CGAATGAGAAATCAGTTTGCACATT-ATTCGTATCTCAAAATTGCAAA 932
Query 1065 CCTGCAAATCCTTCCGAAGAAGCACACAACACAGAAACTGC-ACAGAGAGTGTGGAAAAA 1123
|| ||||| ||| |||||||| ||||||| | |||| || | | ||||| ||| ||||
Sbjct 933 CCAACAAATTGTTCTGAAGAAGCTCACAACATAAAAACAGCGA-ACAGAGTTTGGGAAAA 991
Query 1124 GAC-GTTAGAGCTGGTGGGTCTTCCT-CTCGATGCAGTTGAGAAG-CTCATAGAAGGGGA 1180
||| || |||| || | ||||||||| || ||| |||| || ||| || | || || ||
Sbjct 992 GACAGT-AGAGTTGATTGGTCTTCCTTCT-GATACAGTGGA-AAGGCTTGTGGACGGAGA 1048
Query 1181 AAATATCCAATGCCGGTATGGA 1202
| || ||||||| || ||||||
Sbjct 1049 AGATGTCCAATGTCGTTATGGA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5