BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27790.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945261 jgi|Araly1|945261|scaffold_701490.1 1639 0.0
> Ahg945261 jgi|Araly1|945261|scaffold_701490.1
Length=1078
Score = 1639 bits (887), Expect = 0.0
Identities = 1022/1086 (94%), Gaps = 14/1086 (1%)
Strand=Plus/Plus
Query 1 CCACC-TTGGACTAC-CGGAAAATGGCCAAGGTGGTGGTTTACACGATACTAACCGCCAC 58
||||| |||| || | ||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1 CCACCTTTGG-CT-CTCGGAAAATGGCCAAGGTGGTGGTTTACGCGATACTAGCTGCCAC 58
Query 59 CATCATCTTCCTCATCCTCCTCGCTCATAAGAAACAAAACCAGACTCAATCCATTGAGGG 118
| ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 CTTCATCGTCCTCGTCCTCTTCGCTCATAAGAAACAAAACCGGACTCAATCCATTGAGGG 118
Query 119 TCTCATAACCCGCCGCATCGGACGGAGGCTTGAAATGCCGGTGTTTGACCCTTTGGTGAC 178
|||||||| ||||||||| ||||| |||||||||||||| |||||||||||| |||||||
Sbjct 119 TCTCATAAGCCGCCGCATTGGACGCAGGCTTGAAATGCCCGTGTTTGACCCTCTGGTGAC 178
Query 179 CCGGATTGAGAGGTTGTCTCATGAGAAAGAAGCTGGTACGAAGACCGTGGAGGCTGCGAA 238
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CCGGATCGAGCGGTTGTCTCATGAGAAAGAAGCTGGTACGAAGACCGTGGAGGCTGC-AA 237
Query 239 A-GAGGAGAAAGATGATATGTTTGAGGAGTATTTTGCACAAGAGAGAAGGCTTAACACGA 297
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 AGGAGGAGGAAGATGATATGTTTGAGGGGTATTTTGCACAAGAGAGAAGGCTTAACACGA 297
Query 298 CAATGAGGATCAAGTTCTTGTTTCCTCTGCTTGACGCGTCTCCAAGAGATGGCTTTGTGA 357
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct 298 CAATGAGGATCAAGTTCTTGTTCCCTCTGCTTGACGCGGCACCAAGAGATGGCTTCGTGA 357
Query 358 GCTTGAAAGAGCTTCAGACATGGATGATGCAACAGACAGAAGACAACATGGTTTACAGAA 417
||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 358 GCTTGAAAGAGCTTCAGACATGGATGATGCAGCAGACAGAGGACAACATGGGTTACAGAA 417
Query 418 CCGCCAAAGAGCTTGAGCTACAAGATAAGGACAAGGACGGTGTCATAAC-TTTCGAAGAG 476
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 418 CCGCCAAAGAGCTTGAGCTACAAGATAAGGACAAGGACGGTGTCATAACCTTT-GAAGAG 476
Query 477 TACTTGCCTCAATTCTCTAAACAAGACATTGAGAAAAACGAGAAGGGTCACGGTGAAGCC 536
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 477 TACTTGCCTCAATTCTCTAAGCAAGATATTGAGAAAAACGAGAAGGGTCACGGTGAAGCC 536
Query 537 GGTTGGTGGATGGAGCAATTCAAGAATTCTGATTTTGATCATAATGGCTCTCTCGACATT 596
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 537 GGTTGGTGGATGGAGCAATTCAAGAATTCCGATTTTGATCATAATGGCTCCCTCGACATT 596
Query 597 GAGGAGTTCAACAATTTCTTGCACCCTGAAGACAGCAGAAACGGAGATACACAAAGATGG 656
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 597 GAAGAGTTCAACAATTTCTTGCACCCTGAAGATAGCAGAAACGGAGATACTCAAAGATGG 656
Query 657 GTTCTAAAGGAGCGAATGACGGGCATGGACACGAACGGTGATGGGAAGCTAGAGTACAAA 716
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 GTTCTAACGGAGCGAATGACGGGCATGGACACGAACGGTGATGGGAAGCTAGAGTACAGA 716
Query 717 GAGTTTGTAAAAAATGCATATGAAATGTATAAAGAATTCGCAAAGTTCGAGAAAGAGGAG 776
||||||||| | || |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 717 GAGTTTGTACAGAACACATACGAAATGTATAAAGAATTCGCAAAGTTCGAGACAGAGGAG 776
Query 777 GATGAGAATGTGCCAACACCTCAGCTTCTGTTCGCAGAGATGGACAGAGA-CAAAGACAG 835
|||||||||||||||||| |||||||||||||||| ||| ||||||| || |||||||||
Sbjct 777 GATGAGAATGTGCCAACAGCTCAGCTTCTGTTCGCGGAGCTGGACAG-GAACAAAGACAG 835
Query 836 ATTCCTCGTGGCCGATGAGCTTCGACCCATTTTGCAATATCTTCAACCTGGTGAGATGAG 895
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 ATTCCTCGTGGCCAATGAGCTTCGACCCATTTTGCATTATCTTCAACCTGGTGAGATGAG 895
Query 896 TTATGCCAAATTCTATTCTACTTTCCTTTGCCACGAGGCGGATGAGGATAAAGATGGTAA 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTATGCCAAATACTATTCTACTTTCCTTTGCCACGAGGCGGATGAGGATAAAGATGGTAA 955
Query 956 ACTATCTCTTGAAGAGATGTTGCACCACGAAGATGTCTTTTACAAGGCAGTTCATCACGA 1015
|||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 956 ACTATCACTTGAAGAGATGTTGCGCCACGAAGATGTGTTTTACAAGGCAGTTCATCACGA 1015
Query 1016 AGA-CTTGGACGACGAAGACTATTTTGATCATGATGAACTCTAACTTTTGAATTTGTTTT 1074
||| || ||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1016 AGAACT-GGACGACGAAGACTATTTTGATCATGATGAACTCTAATTTTTG--TGTGTTTT 1072
Query 1075 CCTTCA 1080
||||||
Sbjct 1073 CCTTCA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5