BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27800.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492004 jgi|Araly1|492004|fgenesh2_kg.7__1437__AT4G27800.1 2126 0.0
> Ahg492004 jgi|Araly1|492004|fgenesh2_kg.7__1437__AT4G27800.1
Length=1393
Score = 2126 bits (1151), Expect = 0.0
Identities = 1329/1413 (94%), Gaps = 20/1413 (1%)
Strand=Plus/Plus
Query 6 tttttttACGAAAATCCACGGCCACTAACCGTAAAGGACACTCTTTTGATTTTTCTCTTC 65
|||||||||||||||||||||||||||||||| | | | | |||||||||||
Sbjct 1 TTTTTTTACGAAAATCCACGGCCACTAACCGT--A--A-A-------G-TTTTTCTCTTC 47
Query 66 TTCTACTTAACTCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TTCTACTTAAATCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 107
Query 126 ATCGCTTTCACTCCAACACTCTCCGCCACTCAGCCTATCCTTCCGCCGACGCTGGCGGTG 185
||||||||||||||||||||||||| |||| | || ||||||||||||| |||||||||
Sbjct 108 ATCGCTTTCACTCCAACACTCTCCGTTACTCCGGCTCTCCTTCCGCCGACTCTGGCGGTG 167
Query 186 GCCTTGTCGTCTATCCCACGTATGGTCGTCACCGTTGCTCCGCGATTGCGATCGACGCTC 245
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 168 GCCTTGTCGTCTATCCCACGTATGGTGGTCACCGTTGCACCGCGATTGCGATCGACGCGC 227
Query 246 CGTCGTCTCTGACTGGCGTGACGCCGATTCGTTGGGGTTACACGAGTGTTCAAGGATTCC 305
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 228 CGTCGTCTCTCACTGGCGTGACGCCGATTCGATGGGGTTACACGAGCGTTCAAGGATTCC 287
Query 306 GAGATGAGATGGAAGACGACATCGTAATCCGTTCTGATGCTGTCGATAGCTTCTCCTACG 365
||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||||||||
Sbjct 288 GAGATGAGATGGAGGACGACATCGTTATCCGTTCCGATGCTCTTGATAGCTTCTCCTACG 347
Query 366 CAGCGGTCTTCGACGGCCACGCTGGGTCGTCCTCTGTCAAATTCCTCAGGGAAGAGCTGT 425
| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 348 CCGCGGTTTTCGACGGCCACGCTGGATCGTCGTCTGTCAAATTCCTCAGGGAAGAGCTGT 407
Query 426 ATAAAGAGTGTGTTGGTGCATTGCAAGCTGGATCGTTGTTGAATGGAGGCGATTTCGCAG 485
|||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 408 ATAAGGAGTGTGTTGGGGCATTGCAAGCTGGATCGTTGTTGAAAGGAGGTGATTTCGCAG 467
Query 486 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTTGACCGCAATTTGCTCAAATGGC 545
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 468 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTGGATCGTAATTTGCTCAAATGGC 527
Query 546 TAGAAGCTAACGGTGACGAAGAAGATGAATCAGGTTCAACAGCCACTGTAATGATCATCA 605
||||||| || |||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 528 TAGAAGCAAATGGTGGCGAAGAAGACGAATCAGGTTCAACAGCCACTGTAATGTTCATCA 587
Query 606 GAAATGATGTTTCCTTCATTGCTCATATTGGTGATTCGTGTGCAGTCTTATCTCGATCTG 665
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 588 GAAATGATGTTTCTTTCATTGCGCATATTGGAGATTCGTGTGCAGTCTTATCTCGGTCTG 647
Query 666 GGCAAATCGAGGAATTGACTGATTATCACCGTCCATATGGAAGCAGTAGAGCAGCTATTC 725
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 648 GACAAATCGAGGAATTGACTGATTCTCACCGTCCATATGGAAGCAGTAAAGCAGCTATTC 707
Query 726 AGGAAGTGAAAAGGGTCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 785
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AGGAAGTGAAAAGGATCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 767
Query 786 ACATAGCTGTATCTCGTGCTTTTGGTGACATCCGGTTTAAGACAAAGAAGAATGATATGT 845
||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 768 ACATAGCTGTATCCCGTGCTTTTGGTGACATCCGGTTCAAGACAAAGAAGGATGAAATGT 827
Query 846 TAAAGAAGGGTGTTGATGAAGGAAGATGGTCCGAGAAGTTTGTTTCCAGAATCGAGTTTA 905
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 828 TAAAGAAGGGTGTTGATGAAGGAAGATGGACCGAGAAGTTTGTTTCGAGAATCGAGTTTA 887
Query 906 AAGGGGACATGGTTGTGGCGACTCCAGATATCTTCCAAGTACCTCTGACATCTGATGTGG 965
||||||||||||| || || |||||||||||||||||||||||||| || ||||||||||
Sbjct 888 AAGGGGACATGGTAGTCGCAACTCCAGATATCTTCCAAGTACCTCTTACTTCTGATGTGG 947
Query 966 AATTCATTATTTTAGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1025
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AATTCATTATTTTGGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1007
Query 1026 GTTATGTTAGGGATCAGCTCCGGAAACATGGGAATGTGCAGCTTGCTTGTGAATCTCTTG 1085
||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||
Sbjct 1008 GTTATGTTAGGGATCAGCTTCGGAAACAT-GGAA-----ATCTTGCTTGTGAATCTCTTG 1061
Query 1086 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATTAGCATCATTATTGCTGATCTAG 1145
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1062 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATCAGCATCATTATTGCTGATCTAG 1121
Query 1146 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1181
Query 1206 AGGCTGCAACGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1265
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AGGCTGCAGCGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1241
Query 1266 AAGTGAATTGAACATTCTATCTCTTTCGTTAGTGTATATAAAACCTGTAACTATGTCTAA 1325
||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1242 AAGTGAATTGAACATTCGATCTCTTTCTTTAGTGTATATAAAACATGTAACTATGTCTAA 1301
Query 1326 CACTCTAGTCTTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAGAACCAGCTTT 1385
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1302 CACTCTAGTATTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAAAACCAGCTTT 1361
Query 1386 ATATTATTATATATCCCACTTTCACAAGCGTTG 1418
||||||||||||| || ||||||||||||||||
Sbjct 1362 ATATTATTATATAACC-ACTTTCACAAGCGTTG 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5