BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27810.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492001 jgi|Araly1|492001|fgenesh2_kg.7__1434__AT4G27810.1 872 0.0
> Ahg492001 jgi|Araly1|492001|fgenesh2_kg.7__1434__AT4G27810.1
Length=693
Score = 872 bits (472), Expect = 0.0
Identities = 610/674 (91%), Gaps = 20/674 (3%)
Strand=Plus/Plus
Query 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAG--AAAAACAAGGCGATGGATTTTGA 58
||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAGAAAAAAAAAAAGCTATGGATTTTGA 60
Query 59 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTTTGTTCTCGATTCCATT 118
||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 61 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTCTGTTCTCAAAACCATT 120
Query 119 TAACAGAGCATGTGACACTCCAGGGCTAGCGACGCCGCCTGTGAACATCGCTGGATCAGT 178
|||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 121 GAACAGAGCATGTGACACTCCTGGCCTAGCGACACCGCCTGTGAACATCGCTGGATCGGT 180
Query 179 ACCTTTTCTATGGGAGGAAGCTCCGGGAAAACCTCGCGTCTCTGATGAGAACAAACCGCT 238
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 181 CCCTTTTCTATGGGAGGAAGCCCCGGGAAAGCCTCGCGTTTCTGATGAGAACAAACCGCC 240
Query 239 GGCTTCCAAGCAGAACGAAAGAGAaggaggaggaggaggagTCGTGCGGTGCCTTGAGCT 298
||||||||||||||||| || | ||||||||||||| ||||||| ||||| |||||
Sbjct 241 GGCTTCCAAGCAGAACGCC-GA-A-GGAGGAGGAGGAG---TCGTGCGATGCCTCGAGCT 294
Query 299 TCCGCCGAGGCTATTTTTTCCAGCCGATGA-TGAGCCATCTCCGACCACAGTTCTTGATG 357
|||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 295 TCCGCCGAGGCTGTTTTTTCCAGCTGA-GAATGAGCCATCTCCGACCACAGTTCTTGATG 353
Query 358 GGCCTTACGATGTACCTCGCCGGTCTTTATCAGTGATAAGGAGAAGCGAAAGAGCCTCTG 417
| ||||||||| ||||||| |||||| |||| ||||||||||||||||| |||||||||
Sbjct 354 GTCCTTACGATATACCTCGTCGGTCTCTATCGGTGATAAGGAGAAGCGACGGAGCCTCTG 413
Query 418 AGGGTAGATTCGAGTTTTCACGTTCCACCAATAGCCGCTGCT--G-C-G--ACGGTGGCG 471
||||||||||||| |||||||||||||| || ||||||||| | | | |||| ||||
Sbjct 414 AGGGTAGATTCGACTTTTCACGTTCCACTAACGGCCGCTGCTTCGACCGCGACGGCGGCG 473
Query 472 GCGGTACAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTCTCTC 531
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 474 GCGGCATAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTTTCTC 533
Query 532 ATTCCAAATCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGTGATCCCATGGA 591
|||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 534 ATTC-A--TCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGCGATTCCATGGA 590
Query 592 GGCGGAGACAAGAGAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCAAATCTCTTC 651
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 591 GGCGGAGGCAAGATAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCGAATCTCTTC 650
Query 652 GATTTCTTTT-ATA 664
||||||||| |||
Sbjct 651 TATTTCTTTTTATA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5