BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27840.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491998 jgi|Araly1|491998|fgenesh2_kg.7__1431__AT4G27840.1 1303 0.0
> Ahg491998 jgi|Araly1|491998|fgenesh2_kg.7__1431__AT4G27840.1
Length=1087
Score = 1303 bits (705), Expect = 0.0
Identities = 1012/1146 (88%), Gaps = 78/1146 (7%)
Strand=Plus/Plus
Query 3 TCATCTTTTTGGTTTCGCCAATAATGGAACTCTTCTTCCACCATTTTCCTGGAAAATCTC 62
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2 TCATCGTTTTGGTTTCGCCAATAATGGAACTCTTTTTCCACCATTTTCCCGGAAAATCTC 61
Query 63 GGTATCGAGAAGATGAATCCCTAGACAGATAAATCTAGAATCACTCAAATCTCTGCTCTT 122
| |||||||||||| || ||||||||||||||||||||||||||||||||||| | |
Sbjct 62 GCAATCGAGAAGATGGATTTCTAGACAGATAAATCTAGAATCACTCAAATCTCTG--C-T 118
Query 123 CTTCCGATTCAGATCGTATCGAATTTTGAATTTTGTATCTCGCTACACTGTTCGATTGAG 182
||| | | || || | | |||||||||| |||||||||||| ||
Sbjct 119 CTT-C---T----TC----CG-A---T---TTTTGTATCTAGCTACACTGTTCTCTT--- 156
Query 183 AATTCtttttttCCGATTGATTC-GAATCGGATTTTGtttttttCCTCGATATAGAATGA 241
|| ||||||||||||| |||| | ||||||||||| ||||| |||||||||||||||
Sbjct 157 -TTTTTTTTTTTCCGATTAATTCTG-ATCGGATTTTG--TTTTTGCTCGATATAGAATGA 212
Query 242 CTTCGAATCAACGTATGTTGTTCTACTCCTGCATTGCGAAAGGAACAGTGATTCTCGCAG 301
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 213 TTTCGAATCCACGTCTGTTGTTCTACTCCTGCATTGCGAAAGGAACAGTGATTCTCGCTG 272
Query 302 AATTCGCTTCAAAGGAAGAGCCAGGAATCGAAGATCTAGCTTTGAGATGCATTGAGAACG 361
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AGTTTGCTTCAAAGGAAGAGCCAGGAATCGAAGATCTAGCTTTGAGATGCATTGAGAACA 332
Query 362 TACCTCCACATCATTCGATGATCTCTCACACAGTCCATAAGAGAACCTACGCTTTGATCA 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 333 TACCTCCACATCATTCGATGATCTCTCACACAGTCCATAAAAGAACCTACGCTTTGATCA 392
Query 422 TCGATGGATTGTTTTCGTATTTCGCGATTTTAGATGAGGTCGTAGCGAAATCGGAGTCTG 481
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 393 TCGACGGATTGTTTTCATATTTCGCGATTTTAGACGAGGTCGTAGCGAAATCGGAGTCTA 452
Query 482 TATGGCTATTCAATCGATTGAAATCAGCTACAGAGTCTCTAATGGAAGACGGATCTACTG 541
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 453 TATGGCTCTTCAATCGATTGAAATCAGCTACAGCGTCTCTAATGGAAGACGGATCTACGG 512
Query 542 CGGATTCGTTGGATAATCCGACTCAACACTGTCTCCAATCAAAGCTAGATCCAGTTTTCG 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 513 CGGATTCGTTGGATAATCCGACTCAACACTGTCTCCAATCAAAGCTCGATCCAATTTTCG 572
Query 602 CTGAGATTGCTGCTATTGGTGGTAAT-C-A-TAATAA---GGATTTGGAATTGGAGTT-- 653
||||||| ||| | |||||||||| | | |||||| ||||||||||||||||||
Sbjct 573 CTGAGATCGCTAATGGTGGTGGTAATACTAATAATAACAAGGATTTGGAATTGGAGTTAG 632
Query 654 -T--GG----ATCACCGAGGAGTATAGCGAGGGAGATTAAGAGTAATAATCAGAGTTTGG 706
| || |||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 633 GTATGGTTGGATCACCGAGGAGTATAACGAGGGAGATTAAGA--A-TAATCAGAGTTTGG 689
Query 707 ATTCGTCCA-AGGGACGAAAAGGCGGTGCGTTGATGCCGCTTTTAGGAAAGCCGTTGAGG 765
||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 690 ATTCGTCGAGAGG-ACGAAAAGGCGGTGCGTTGATGCCGCTTTTAGGAAAGCCATTGAGG 748
Query 766 GTGTTGAAGAACAAGAAGAGATTGCAGACGGAAGCGAAAAGTGAAGGTCATTGGAATGAG 825
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 749 GTGTTGAAGAACAAGAAGAGATTGCAGACGGAAGCGAAAAGTGAAGGAAATTGGAATGAG 808
Query 826 AAGAAGATGGACCTAGGAGGAGGAGGTAAAGGAGTGAGGAATGGTTTGATTCATG-ATCA 884
||||||||||| |||||||||| ||| |||||||| ||||||||||| || || |
Sbjct 809 AAGAAGATGGATTTAGGAGGAGG---TAAGGGAGTGAGAAATGGTTTGATG-ATTCATGA 864
Query 885 TCATCATAGACAAAAGGCAAAACAGATATGGAGGAAACATGTTTGGATTGTTTTGATGTT 944
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 865 TCATCATAGACAAAAGGCAAAACAGATATGGAGGAAACATGTGTGGATTGTTTTGGTGTT 924
Query 945 TGATCTCTGTATCTGCCTTGTTCTCTTTGGAATCTGGCTTTGGATTTGTCAAGGGTTTCA 1004
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 925 TGATCTCTGTATCTGTCTTGTTCTCTTTGGAATCTGGCTTTGGGTTTGTCAAGGGTTTCA 984
Query 1005 ATGCATCGATGGGTAATTATCTTCGATCATCTAAGTTATGTGTGGTTGAATGTTTaaaaa 1064
|||||||||||||||||||||| | | | || || ||||||| ||
Sbjct 985 ATGCATCGATGGGTAATTATCT--G-T-------G----GT-TG----AATGTTTTTCAA 1025
Query 1065 aaaTATCCGAGGTGTTGTTTCCAGGGTTTAAAAAGAAAGCCTGGTTTACACGTTTGTGAT 1124
|| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1026 AA-T--CCGAGGTGTTGTTTCCAGGGTTTAAAA-GAAAGCCTGGTTTACACGTTTGTGAT 1081
Query 1125 GAtgtt 1130
||||||
Sbjct 1082 GATGTT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5