BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27850.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value Ahg889357 jgi|Araly1|889357|Al_scaffold_0007_1343 448 9e-125 > Ahg889357 jgi|Araly1|889357|Al_scaffold_0007_1343 Length=1557 Score = 448 bits (242), Expect = 9e-125 Identities = 443/537 (82%), Gaps = 26/537 (5%) Strand=Plus/Plus Query 76 GGAACCGAGAGAGAAGAG-AATAACAATAATGAATCTCAAG-AAGAGACGAGAACGTCGA 133 |||||||||||||||| | | ||||||||||||||||||| | | | ||| | ||| Sbjct 157 GGAACCGAGAGAGAAG-GCACCAACAATAATGAATCTCAAGTTATACATGAG-GTGGCGA 214 Query 134 GAAGTCCCAATGAGGCTTTGGATGAGATAAGGAGGCAACAGACGCATAACCTCTACTGTC 193 ||||||| ||| | |||||||||||||||| || ||||||||| ||||| |||||||||| Sbjct 215 GAAGTCCTAATCATGCTTTGGATGAGATAAAGAAGCAACAGACTCATAATCTCTACTGTC 274 Query 194 CTAAATGTAAAACTAACATCACCAAAAG-CGCTGAACTCGTTGTAAAGAATCAAGAGACC 252 |||||||||||| |||||||||| | || |||| |||| |||||||||||||||| ||| Sbjct 275 CTAAATGTAAAAGTAACATCACC-ACAGATGCTGTACTCTTTGTAAAGAATCAAGAAACC 333 Query 253 GATTCGTACAAAACAAAGGCTTACGTACTTTGGGTTCCCCTCGTTATCTCGCCCTTCGAG 312 ||||||||||||||| || ||||||||||||||||||||||||||||| || || || || Sbjct 334 GATTCGTACAAAACAGAGCCTTACGTACTTTGGGTTCCCCTCGTTATCCCGGCCATCAAG 393 Query 313 TTCCCTACCCTTCATCTCTTATTGTCTTTTCTCACAGGACTATGGAAGAAACTAAAGACA 372 ||||||||| || |||||| |||||||||||| |||||| ||||||||||||||||||| Sbjct 394 TTCCCTACCTTTGATCTCTCGTTGTCTTTTCTCGCAGGACCATGGAAGAAACTAAAGACA 453 Query 373 CTTGTCCCAAACTGTTTGTCACGGCTCAGTCCCAACTTTCTGC-C-TCTGCGGTACCTAC 430 |||||| ||||||||||| || | || || || || || | | | |||||| |||| Sbjct 454 CTTGTCGCAAACTGTTTGCCAAG--TC--TC--AA-TT-CTCCACGTTTGCGGTTCCTAT 505 Query 431 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTCCTGTGGTCCTCTGATCCTCCT-CTG 489 |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| | | Sbjct 506 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTTCTGTGGTCCTCTCATCCCCCTTC-G 564 Query 490 CCACCACCACCGCCACCTTATCCTTCACCATT-GCCACCGCCTCCTTCGCCTTCACCAAC 548 ||||| |||| |||||| |||||| || || |||| ||| | ||| |||| | Sbjct 565 CCACCGCCACTGCCACCGCCTCCTTCTCC-TTCGCCAGTGCCGG-T--GCCGCCACCG-C 619 Query 549 ACCAGGGCCGGATTCTCCTTTGCCATCGCCAGGGCCGGATTCTCCTTTGCCACTGCC 605 | ||| || |||||||| ||||||||||| ||| |||||||| |||| |||| Sbjct 620 -C-AGGACCACCTTCTCCTTCGCCATCGCCAGAGCCTCCTTCTCCTTCGCCAGTGCC 674 Score = 255 bits (138), Expect = 6e-67 Identities = 204/235 (87%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 1500 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTTGCTGCATCTCTGGTCTGCGTCATCTC 1559 ||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||| Sbjct 1321 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTCGCTGTATCTTTGGTCTGCGTGATCT- 1379 Query 1560 T-CTCTCCTTTGCCAAA--GCCTACGCTTTCCGCATGCAAAAACTCAGGACCATGGCTGA 1616 | ||||||||||||||| || ||||| ||||| ||| || | ||| |||| ||||||| Sbjct 1380 TACTCTCCTTTGCCAAAAAGCTTACGCCTTCCGAATGGGAAGAGTCAAGACCGTGGCTGA 1439 Query 1617 ATACACCGGAATGGCGTTTGGGGCATCTGC-CTTTTCATTCATTGCCAGCCGAATCG-TC 1674 |||||||||||||||| |||| || ||||| |||| | ||||| ||||||| ||||| | Sbjct 1440 ATACACCGGAATGGCGATTGGAGCGTCTGCTCTTT-CTTTCATCGCCAGCCAAATCGCT- 1497 Query 1675 AGTGATATCTTTGAAAAGTTTGGCTTTCATGAGCTTGCAGCTGAGTACCGAAAAG 1729 |||||||||||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct 1498 AGTGATATCTTTGAAAAGTTAGGCTTTCATGAGCTTGCCTCTGAATACCGAAAAG 1552 Score = 228 bits (123), Expect = 1e-58 Identities = 137/144 (95%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1350 TGTTGAAATATATCGTGGTTCTAGTTCAAAACCACTTACCAAGAGAGCTAGACATCTTGA 1409 ||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct 1055 TGTGGAAATATATCGTGGTTCAAGTTCAAAACCTCGTACCAAGAGAGCTAGACATCTTGA 1114 Query 1410 AGAGTATTGTGTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCCG 1469 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1115 AGAGTATTGTTTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCTG 1174 Query 1470 CTGTCGCTTCCGGAGCTTCAACTC 1493 || ||||||||||||||||||||| Sbjct 1175 CTATCGCTTCCGGAGCTTCAACTC 1198 Score = 180 bits (97), Expect = 4e-44 Identities = 115/124 (93%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 890 TCATACATTTCCCGAGTATCAAGTACCTTTCTGTATTCTCGCTATTGTTCCTTGCCATTC 949 |||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 740 TCATACATTTTCTGAGTATCAAGTACCTTTCCGTATTCTCGTTATTGTTCCTTGCCATTC 799 Query 950 TGACTCTCCCTTGGGCTTCCATTTCCCCCATCTTCAATAACCTTATTGCAGCAATTAAAA 1009 |||||||||| ||| ||||||||||||| ||| ||||||||||||| ||||||||||||| Sbjct 800 TGACTCTCCCCTGGCCTTCCATTTCCCCTATCATCAATAACCTTATAGCAGCAATTAAAA 859 Query 1010 CATG 1013 |||| Sbjct 860 CATG 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65058138460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5