BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27850.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889357 jgi|Araly1|889357|Al_scaffold_0007_1343 448 9e-125
> Ahg889357 jgi|Araly1|889357|Al_scaffold_0007_1343
Length=1557
Score = 448 bits (242), Expect = 9e-125
Identities = 443/537 (82%), Gaps = 26/537 (5%)
Strand=Plus/Plus
Query 76 GGAACCGAGAGAGAAGAG-AATAACAATAATGAATCTCAAG-AAGAGACGAGAACGTCGA 133
|||||||||||||||| | | ||||||||||||||||||| | | | ||| | |||
Sbjct 157 GGAACCGAGAGAGAAG-GCACCAACAATAATGAATCTCAAGTTATACATGAG-GTGGCGA 214
Query 134 GAAGTCCCAATGAGGCTTTGGATGAGATAAGGAGGCAACAGACGCATAACCTCTACTGTC 193
||||||| ||| | |||||||||||||||| || ||||||||| ||||| ||||||||||
Sbjct 215 GAAGTCCTAATCATGCTTTGGATGAGATAAAGAAGCAACAGACTCATAATCTCTACTGTC 274
Query 194 CTAAATGTAAAACTAACATCACCAAAAG-CGCTGAACTCGTTGTAAAGAATCAAGAGACC 252
|||||||||||| |||||||||| | || |||| |||| |||||||||||||||| |||
Sbjct 275 CTAAATGTAAAAGTAACATCACC-ACAGATGCTGTACTCTTTGTAAAGAATCAAGAAACC 333
Query 253 GATTCGTACAAAACAAAGGCTTACGTACTTTGGGTTCCCCTCGTTATCTCGCCCTTCGAG 312
||||||||||||||| || ||||||||||||||||||||||||||||| || || || ||
Sbjct 334 GATTCGTACAAAACAGAGCCTTACGTACTTTGGGTTCCCCTCGTTATCCCGGCCATCAAG 393
Query 313 TTCCCTACCCTTCATCTCTTATTGTCTTTTCTCACAGGACTATGGAAGAAACTAAAGACA 372
||||||||| || |||||| |||||||||||| |||||| |||||||||||||||||||
Sbjct 394 TTCCCTACCTTTGATCTCTCGTTGTCTTTTCTCGCAGGACCATGGAAGAAACTAAAGACA 453
Query 373 CTTGTCCCAAACTGTTTGTCACGGCTCAGTCCCAACTTTCTGC-C-TCTGCGGTACCTAC 430
|||||| ||||||||||| || | || || || || || | | | |||||| ||||
Sbjct 454 CTTGTCGCAAACTGTTTGCCAAG--TC--TC--AA-TT-CTCCACGTTTGCGGTTCCTAT 505
Query 431 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTCCTGTGGTCCTCTGATCCTCCT-CTG 489
|||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| | |
Sbjct 506 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTTCTGTGGTCCTCTCATCCCCCTTC-G 564
Query 490 CCACCACCACCGCCACCTTATCCTTCACCATT-GCCACCGCCTCCTTCGCCTTCACCAAC 548
||||| |||| |||||| |||||| || || |||| ||| | ||| |||| |
Sbjct 565 CCACCGCCACTGCCACCGCCTCCTTCTCC-TTCGCCAGTGCCGG-T--GCCGCCACCG-C 619
Query 549 ACCAGGGCCGGATTCTCCTTTGCCATCGCCAGGGCCGGATTCTCCTTTGCCACTGCC 605
| ||| || |||||||| ||||||||||| ||| |||||||| |||| ||||
Sbjct 620 -C-AGGACCACCTTCTCCTTCGCCATCGCCAGAGCCTCCTTCTCCTTCGCCAGTGCC 674
Score = 255 bits (138), Expect = 6e-67
Identities = 204/235 (87%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 1500 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTTGCTGCATCTCTGGTCTGCGTCATCTC 1559
||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||
Sbjct 1321 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTCGCTGTATCTTTGGTCTGCGTGATCT- 1379
Query 1560 T-CTCTCCTTTGCCAAA--GCCTACGCTTTCCGCATGCAAAAACTCAGGACCATGGCTGA 1616
| ||||||||||||||| || ||||| ||||| ||| || | ||| |||| |||||||
Sbjct 1380 TACTCTCCTTTGCCAAAAAGCTTACGCCTTCCGAATGGGAAGAGTCAAGACCGTGGCTGA 1439
Query 1617 ATACACCGGAATGGCGTTTGGGGCATCTGC-CTTTTCATTCATTGCCAGCCGAATCG-TC 1674
|||||||||||||||| |||| || ||||| |||| | ||||| ||||||| ||||| |
Sbjct 1440 ATACACCGGAATGGCGATTGGAGCGTCTGCTCTTT-CTTTCATCGCCAGCCAAATCGCT- 1497
Query 1675 AGTGATATCTTTGAAAAGTTTGGCTTTCATGAGCTTGCAGCTGAGTACCGAAAAG 1729
|||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 1498 AGTGATATCTTTGAAAAGTTAGGCTTTCATGAGCTTGCCTCTGAATACCGAAAAG 1552
Score = 228 bits (123), Expect = 1e-58
Identities = 137/144 (95%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 1350 TGTTGAAATATATCGTGGTTCTAGTTCAAAACCACTTACCAAGAGAGCTAGACATCTTGA 1409
||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1055 TGTGGAAATATATCGTGGTTCAAGTTCAAAACCTCGTACCAAGAGAGCTAGACATCTTGA 1114
Query 1410 AGAGTATTGTGTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCCG 1469
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1115 AGAGTATTGTTTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCTG 1174
Query 1470 CTGTCGCTTCCGGAGCTTCAACTC 1493
|| |||||||||||||||||||||
Sbjct 1175 CTATCGCTTCCGGAGCTTCAACTC 1198
Score = 180 bits (97), Expect = 4e-44
Identities = 115/124 (93%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 890 TCATACATTTCCCGAGTATCAAGTACCTTTCTGTATTCTCGCTATTGTTCCTTGCCATTC 949
|||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 740 TCATACATTTTCTGAGTATCAAGTACCTTTCCGTATTCTCGTTATTGTTCCTTGCCATTC 799
Query 950 TGACTCTCCCTTGGGCTTCCATTTCCCCCATCTTCAATAACCTTATTGCAGCAATTAAAA 1009
|||||||||| ||| ||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 800 TGACTCTCCCCTGGCCTTCCATTTCCCCTATCATCAATAACCTTATAGCAGCAATTAAAA 859
Query 1010 CATG 1013
||||
Sbjct 860 CATG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5