BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27860.1
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354010 jgi|Araly1|354010|fgenesh1_pg.C_scaffold_7001183 1201 0.0
> Ahg354010 jgi|Araly1|354010|fgenesh1_pg.C_scaffold_7001183
Length=1749
Score = 1201 bits (650), Expect = 0.0
Identities = 768/826 (93%), Gaps = 4/826 (0%)
Strand=Plus/Plus
Query 1024 AAACTCAAAATCACGATAAAGAAGCTGCAGATCCTGACCAAGATGTAGACAAGGAAACAG 1083
||||||||||| ||||| | ||| |||| ||||||| |||||| | |||||| ||||||
Sbjct 926 AAACTCAAAATAACGATGACCAAGATGCAAATCCTGATCAAGATTTTGACAAGAAAACAG 985
Query 1084 AGAACCAAAA-AAGTCACCTAACTCCGATATATCCTTCACCACTGGAGCAACCTTCCAAG 1142
| |||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 986 ACAACCAAAACAA-TCACCTAACTCCGATATATCCATCAACACTGGAGCAACCTTCCAAG 1044
Query 1143 CAAATTATCAATAAGGAAACTCAAACAGAACCTATGTTGCCACCTAATGCTCAATCAGAG 1202
||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||
Sbjct 1045 AAAATTATCAATAAGGAAACTCAAGCAGAACCTGTATTGCCACCTAATGCTCAACCAGAG 1104
Query 1203 ATCCCAAATAGTGTTGAACCACGCAAAGGCGGTAATAAAGTAGAAATTCTGAAAAGTATT 1262
|||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||
Sbjct 1105 ATCCCAAATAGTGTTGAACCACGCAAAGACGGTAATAAACTCGAAATCCTGAAAAGTATT 1164
Query 1263 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTATGCACGGTAACATCTGCGGCAGCT 1322
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1165 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTTTGCACCGTAACATCTGCGGCGGCG 1224
Query 1323 TCTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 ACTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1284
Query 1383 CTTCTGACTGTTCACAGCCTCCAAGAACTAATAAACGAGAAACCCAGAAAACAAACCAAC 1442
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1285 CTTCTGACCGTTCACAGTCTCCAAGAACTAATAAACGAGAAACCCAGAAGACAAACAAAC 1344
Query 1443 ACTGATGATTCTCCagaagaaggagaaggagaagaagatcgatacgaggaagtactcggg 1502
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1345 ACTGATGATTCTCCAGGAGAAGTAGAAGGAGAAGAAGATCGATACGAGGAAGTTCTCGGA 1404
Query 1503 agaagagagTATTCGAGGATTCACAGAGTGATCGCAATCTCTTCTTTCGTCATCTTCGGA 1562
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1405 AGAAGAGAGTATTCGAGGCTTCACAGATTGATCGCAATCTCTTCTTTCGTCGTCTTCGGC 1464
Query 1563 TTGATCCCACCTTTAGTATACGGTTTCTCGTTTCGAAAAAAGAT-GGAAAAGAGACAAGA 1621
|||||||||||||| |||||||| ||||||||||||| || ||| ||| |||||||||||
Sbjct 1465 TTGATCCCACCTTTGGTATACGGCTTCTCGTTTCGAAGAA-GATTGGAGAAGAGACAAGA 1523
Query 1622 GTACAAGGTTTTAGCTGTTTACGCAGTGTCTCTACTCTGCATCGTCTTGCTCTCAATAGC 1681
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1524 GTACAAGGTTTTAGCAGTTTACGCAGTGTCTCTACTCTGCGTCGTCTTGCTCTCAATTGC 1583
Query 1682 GAAAGCTTACGTGTCGAAGAAACGCGATTATGTCAAGACTCTGTTTCGGTACACGACGAC 1741
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1584 GAAAGCTTACGTCTCGAAGAAACGGGATTATGTCAAGACTCTGTTTCGGTACACGACGAT 1643
Query 1742 GGCGACGACGGCGTCGGGATTCTCTCAATTTGTGGGATACTTGGTGAGTCAATGGCTTGA 1801
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1644 GGCGACGACGGCATCGGGATTCTCTCAATTTGTGGGATACTTGGTCAGTCAGTGGCTTGA 1703
Query 1802 GAAAAGCGGGTTTTATGATGATTCTCCAGAAACTCAACGAGTTTGA 1847
|||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1704 GAAAAGCGGGCTTTATGATGATTCTTCAGAAACTCAACGAGTTTGA 1749
Score = 1103 bits (597), Expect = 0.0
Identities = 926/1075 (86%), Gaps = 62/1075 (6%)
Strand=Plus/Plus
Query 12 ATGGATCCCACCATGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGCACA 71
||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGAACCTACCACGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGTACC 60
Query 72 GATGAATTGACCAACCTTCCCCCGGAGGACTCGCCACTCGACAGCGAGAAGGATGATAGC 131
||||||||||||||||| |||||||| | |||||||| | |||| || |||| ||| ||
Sbjct 61 GATGAATTGACCAACCTGCCCCCGGA--A-TCGCCACTAGGCAGCCAGGAGGACGATGGC 117
Query 132 GTTGACTTCAGCCAGGAGCAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 191
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GTTGACTTCAGCCACGAACAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 177
Query 192 TCAAGATCCGTAGACAAGAACCAATACTCTGAAACTGAAGTTGTAGTTAGAGCAAAAGAT 251
||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 178 TCAAGATCCATAGACAAGAACCAATGCTCTGAAACTGAAGATGTAGTTAGAGCAAAAGAT 237
Query 252 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTGATCAAAAACCAACAT 311
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 238 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTAATCAAGAACCAACAT 297
Query 312 AAGTATTACATATACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTG 371
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGTATTACTTTTACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTA 357
Query 372 AAGATATCAGATCCCAAACACACAAAAGACCATGACAA--AGC-T-G---T--TGACAGT 422
||||| ||||||||| ||| ||||||||||||||||| || | | | |||||||
Sbjct 358 AAGATGTCAGATCCCCAACCCACAAAAGACCATGACACTGAGAATAGAGCTAATGACAGT 417
Query 423 GACACTGAGAATGGTTCAAAATCCAAAGACAAGAACACAAAGGTTCCATCATGGTTCTCT 482
|||| |||||||||||||| ||||| || ||| || |||||||||||||||||||| |||
Sbjct 418 GACATTGAGAATGGTTCAAGATCCATAGGCAAAAAAACAAAGGTTCCATCATGGTT-TCT 476
Query 483 -GATTTTAT-TCAGCCGCTGTTTTCTTCTGA--A-GA-CAGAGGAAAGA--AAGG-G-GT 532
|||||| | |||||||||| ||||||||| | | | | ||||| |||| | |
Sbjct 477 TGATTTT-TGTCAGCCGCTGGTTTCTTCTGTTTATGGTCCTAACAAAGACCAAGGCGAGA 535
Query 533 T-G---TTGATTCAGAGTTACTAGGAACTTACGAAGATCTCGGTATCATTGGTGAGGAAC 588
| |||||||| |||||| || ||||| ||| || || | ||||| |||||| ||||
Sbjct 536 AAGGGGTTGATTCAAAGTTACCAGAAACTTCCGATGACCTTGATATCAATGGTGAAGAAC 595
Query 589 CGAGCATAGATGTCAGTAACGAGAAAGACAGACCGAGTTTTCCAAAGTGGTACCTCGATG 648
| ||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 596 CAAGCATTGATGTCAGTAATGAGAAAGGCGGACCGAGTTTTCCAAAGTGGTACCTCGATG 655
Query 649 TTTTTGCTTGGTTATTCCTCTGTATTATTATTGCTCTTTCTGTCCTTTCGACTTCTCCAC 708
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 TTTTTGCTTGGTTGTTCCTCTGTATTATTATTGCTCTCTCTGTCCTTTCGACTTCTCCAC 715
Query 709 CGCCTTTCATTCAACCACATCTGCAATTACCATCTATGCCTACATTGAGGATGCCTTCTG 768
|||||||||||||||| ||||||||||| || ||||||||| ||||| || ||||||| |
Sbjct 716 CGCCTTTCATTCAACCGCATCTGCAATTGCCTTCTATGCCTTCATTGCGGCTGCCTTCCG 775
Query 769 CTTCTGTACTTTTGTTACTTCCCACATCTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 828
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 776 CTTCTATACTTTTGTTACTTCCCACGTTTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 835
Query 829 GGTCCCGTTTCACTCCGAGATATCACAAGGAGAAAGGCGA-----GG-TCG-TTCCCAAG 881
|||||||||||| ||| ||||||||| ||||||||||||| || ||| |||| |||
Sbjct 836 GGTCCCGTTTCAGTCCAAGATATCACGAGGAGAAAGGCGAAAATAGGGTCGATTCC-AAG 894
Query 882 TCTACTGATTCCA--AGT------C----------TCA------CGATGACCAAGCTGCA 917
|||||| || ||| ||| | ||| ||||||||||| ||||
Sbjct 895 TCTACTAATACCACTAGTGAAGAACCAGCAAAAACTCAAAATAACGATGACCAAGATGCA 954
Query 918 AATACTGATCAAGATTTTGACAAGAAAACAGACAAC-AAAAGAAATCGCCTAACTCCTAT 976
||| |||||||||||||||||||||||||||||||| |||| || || ||||||||| ||
Sbjct 955 AATCCTGATCAAGATTTTGACAAGAAAACAGACAACCAAAACAA-TCACCTAACTCCGAT 1013
Query 977 ATACCCTTCATCACTAGAGAAACCTTCCAAGCAAACTGTCAATAAGGAAACTCAA 1031
||| || ||| |||| ||| ||||||||||| ||| | |||||||||||||||||
Sbjct 1014 ATATCCATCAACACTGGAGCAACCTTCCAAGAAAATTATCAATAAGGAAACTCAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80256146215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5