BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27870.1
Length=2549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328905 jgi|Araly1|328905|fgenesh1_pm.C_scaffold_7001132 1838 0.0
> Ahg328905 jgi|Araly1|328905|fgenesh1_pm.C_scaffold_7001132
Length=2334
Score = 1838 bits (995), Expect = 0.0
Identities = 1114/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 1178 CAGCCGTTGTTCAGCCTGATGCAGCCACTTCGATTCAAGTTGCAAAATCAAACGATACAA 1237
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1166 CAGCCGCTGTTCAGCGTGATGCAGCCACTTCGATTCCAGTTGCAAAATCAAACGATACAA 1225
Query 1238 GCGAAA-TTGTAAACAATGGAGCT-ATTGTTGGAGACGGGCAAAAGTTTCTGGCTCCTAT 1295
|| ||| |||| |||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1226 GC-AAAGTTGTCAACAATGGAG-TGATTGTTGAAGACGGGCAAAAGTTTCTGGCTCCTAC 1283
Query 1296 GGTGGAGGAGCAAACACAGCAAAAGATTGACAATGATGATTCTAGTACAGCAGACGGGAA 1355
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GACGGAGGAGCAAACACAGCAAAAGATTGACAATGATGATTCTAGTACAGCAGACGGGAA 1343
Query 1356 TCACACGTCAGACAAAGGACGTCTCTCCCCAATTCAACCATCTCATGGCATGAGTATACT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1344 GCACACGTCAGACAAAGGACGTCTCTCCCCAATTCAACCATCTCATGGCATGAGTATATT 1403
Query 1416 AAACACAGTGACTAACGGACCCGACGGATTGAAAGTAGAAACTACAATTCATGAAGAAGG 1475
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1404 AAACACAGTGACTAACGGACCCGACGGATTTAGAGTAGAAACTACATTTCATGAAGAAGG 1463
Query 1476 TGCCCCTCTTCTGTTTGAAGGAAAAGACACTCCTGACACAAGCACGGCAGATTTTGGTCT 1535
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 1464 TGCCCCTCTTCTGTTTGAAGGAAAAGACACTTCTGACACAAGAAAGCCAGATTTTGGTCT 1523
Query 1536 GACCAAAGTAACAGGTGTGATGGACACAGGTGACAGAGGAGTTATTACCGGTCCAGCAAA 1595
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1524 GACCAAAGTAACAGGTGTGATGGACACAGGTGACAGAGGAGTTATCACCAGTCCAGCAAA 1583
Query 1596 TCCTGAAATTGATATTTCAGCAGGGAATTTGCTGGAAGAAGGGTCTCTAAGGGAACCGTT 1655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TCCTGAAATTGATATTTCACCAGGGAATTTGCTGGAAGAAGGGTCTCTAAGGGAACCGTT 1643
Query 1656 AATGAGACGAGTTGTTGTTCAAGGACGTAAACTGGAAATCTTGAAAAGCATTGTCTACGG 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AATGAGACGAGTTGTTGTTCAAGGACGTAAACTGGAAATCTTGAAAAGCATTGTCTACGG 1703
Query 1716 AGGTCTACTAGAAGCCATCACAAGCCTTGGTGTTATTTCATCTGCCGCTGGTTCTGGTGC 1775
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1704 AGGTCTACTAGAAGCCATCACAAGCCTTGGTGTTATTTCATCCGCCGCTGGTTCTGGTGC 1763
Query 1776 TTCAATGTTGAATATTCTGGTCTTGGGGCTTGCAAACTTGCTTGGCGGGCTTATTCTTAT 1835
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||
Sbjct 1764 TTCAATGTTGAATATTCTGGTCTTGGGACTTGCAAATTTGATTGGCGGGCTTATTCTCAT 1823
Query 1836 TATTCATAATCTCCAAGAACTTAGAGAGGAGGAACCCATAAGAACAACAACAGAAGATAA 1895
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1824 TATTCATAATCTCCAAGAACTTAGAGAGGAGGAACCCATTAGAACAACAACAGAGGATAA 1883
Query 1896 CCAGACTAACGGTAGAGAAGAAGAAGAAGGTCGGTATAAGCGACTCCTTGG-ACGAAGAG 1954
|||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1884 CCAGACTAACAGTCGAGAAGAAGAAGAAGGTCGGTATAAGCGACTCCTTGGCA-GAAGAG 1942
Query 1955 AAAATTTCACACTTCACGCAACAGTCGCAATCTTATCCTTCATAATCACCGGAATACTCC 2014
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1943 AAAATTTCACGCTTCACGCAACAGTCGCAATCTTATCCTTCATAATCGTCGGAATACTCC 2002
Query 2015 CTCCTGTAGTCTACTATTTCTCATTCAGTGAAAAACACAACAAAGACTACAAAGTTGCTT 2074
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 2003 CTCCTGTAGTCTACTATTTCTCATTCAGCGAAAAACACAACAAAGACTACAAAGTGGCAT 2062
Query 2075 CAGTTTTCGGGGCATCTCTATTCTGCATCGTCTTGCTCGCCATAGCCAAAGCTCATGTGA 2134
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2063 CAGTTTTCGGGGCATCTCTATTCTGCATAGTCTTGCTCGCCATAGCCAAAGCTCACGTGA 2122
Query 2135 GGTACCCGAGAGGCAGCTACCTGAAGAGCATTCTGTACTACGGGTCAATTGCTGTATCGG 2194
|||||||||||||||||||||||||||||| ||||||| | | |||| ||||||||||
Sbjct 2123 ATTACCCGAGAGGCAGCTACCTGAAGAGCATTTTGTACTATGCGACAATCGCTGTATCGG 2182
Query 2195 TGTCGGGGATTTCTTATGTGGTTGGTAACTTTCTGGAACAGTTGCTTGAGAAGCATGGAT 2254
|||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 2183 TGTCGGGGATTTCTTACGTGGTTGGTAACTTTCTGGAACATTTGCTTGGGAAGTATGGAT 2242
Query 2255 GGTCTGATGGATCGGAAACACCTGTGGGACAGATGATGCTTTCATCACTTATGGGAAGAA 2314
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2243 GGTCTGATGGATCAGAAACTCCGGTGGGACAGATGATGCTTTCATCACTTATGGGAAGAA 2302
Query 2315 AAGCCGGCTTTGGATACTCATCATCGTACTGA 2346
|||||||||| |||||||||||||||||||||
Sbjct 2303 AAGCCGGCTTAGGATACTCATCATCGTACTGA 2334
Score = 616 bits (333), Expect = 3e-175
Identities = 467/527 (89%), Gaps = 28/527 (5%)
Strand=Plus/Plus
Query 416 AAGGTTCTGAGTCAGCTGGT-GCCATACCTGATGCTCATGAGGAGTCTCAAACTGCTGAC 474
||||||||||| |||||||| | | || |||||||||| ||||||||||||||||||
Sbjct 410 AAGGTTCTGAGACAGCTGGTGGAGA-ACATGATGCTCAT---GAGTCTCAAACTGCTGAC 465
Query 475 TTGAATGGGGAGCAAACGCAGTTAGAACCTGAAAACGGTTCAACTTCTGAGGATAACGAA 534
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 466 TTGAATGGGGAGGAAAAGCAGTTAGAACCTGAAAACGATTCAACTTCTGAGGATAACAAA 525
Query 535 AGATCTCGTGAAATTGAAGAAGTACTA-GATGGTGATGTCTCTAAAGA-CTTGGATGCTG 592
|| ||||||||||| |||||||||| | |||||||||||||||||||| | | |||||||
Sbjct 526 AGTTCTCGTGAAATCGAAGAAGTAC-AGGATGGTGATGTCTCTAAAGACCGT-GATGCTG 583
Query 593 TTGATCCA-CTCGCTGGTGAGGTGATAGAGGAGGAGGTGGACTTCGAAGATGTTGAATAT 651
|||||| | || |||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 584 TTGATCAACCT-GCTGGTGATGTGATAGAGGAGGAGGTGGACATCGAAGATGTTGAAGAT 642
Query 652 CATGATGTGGAGAATATGATGGATAAGCAAGAGACACATGATTTGTACTGTCCAAACTGC 711
|||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 643 TATGATGTGGAGAATGTGCTGGATAAGCAAGAGACACATGATCTGTTCTGTCCAAACTGC 702
Query 712 GATTCTTGCATCACCAAAA-AGGTTATCCTCAAAAGAAGGAAACGGAA-GATCCGTCGTC 769
||||||||||||||||||| || || ||||||||||||| |||||||| | |||| | |
Sbjct 703 GATTCTTGCATCACCAAAAGAG-TTGTCCTCAAAAGAAGAAAACGGAAAG-TCCG-C--C 757
Query 770 ATGAGCTGGGAGATTCAAAGCG-G--------CCTCATTTGACTGAGCCTCTTTTTCATT 820
|||||||||||||||||||||| | ||||||| ||||||||||||| ||||||
Sbjct 758 ATGAGCTGGGAGATTCAAAGCGCGTGAGAGGGCCTCATTGGACTGAGCCTCTTCTTCATT 817
Query 821 CGGAAGACAATTTGCCATCTCTAGATGGCGGTGAAAACTCTGCAAATGAGTCATTTGTCT 880
|||||||||||||||||||||||| || ||||||||||||||| |||| |||||| | |
Sbjct 818 CGGAAGACAATTTGCCATCTCTAGGTGTTGGTGAAAACTCTGCAGATGAATCATTTCTGT 877
Query 881 TCAAGTGCTTGTCATGCTTTACCATATTTATTCCCAAAGGGGT-GAG 926
|||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 878 TCAAGTGCTTGTCATGCTTTACCATATTTATTCCCAAAGGTGTCGAG 924
Score = 375 bits (203), Expect = 6e-103
Identities = 315/366 (86%), Gaps = 20/366 (5%)
Strand=Plus/Plus
Query 61 ATGGGATCCGCCGCCGAACTCACGGAGCCCACCACCGGGACCGAGAAGCTTCACCAGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGGATCCGCCGCCGAACTCACGGAGCCCACCACCGGGACCGAGAAGCACCACCAGCCT 60
Query 121 ATAGAAGTTGAAGAAGATGACGAACAAATTGTTGATTTGGAGAGGAAAACATTCCGTCAT 180
|||||||| |||||||| ||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 61 ATAGAAGTGGAAGAAGAAGACGAGCAAATTGTCGACTTGGAGAGGAAAACATTTCGTCAT 120
Query 181 GGAAAGGGACACGATACTAGTGTGGACAGTAGTACAATCACCA--AC-ACCAGCTC--G- 234
|||||| |||||||||||||| | ||||||||||||||||||| || |||| | | |
Sbjct 121 GGAAAGAGACACGATACTAGTTTAGACAGTAGTACAATCACCAGTACCACCAACACCAGC 180
Query 235 TCGTCGTCTTCTAGCTTTTCCGGTGATGGTGGAACGGAAGAGACCCCCGATTTCCACAGC 294
||| |||||||||||||||||||||||| | | ||| |||||| |||||||||||||||
Sbjct 181 TCGGCGTCTTCTAGCTTTTCCGGTGATGTT--A-CGGTAGAGACTCCCGATTTCCACAGC 237
Query 295 AACGGCGATGGAGAACATACCG-ATTTAGTAAATTTGGAGGTCCCGGAGCTAGAAACTGA 353
|||| | | ||||||||||||| | | ||| ||||||||| | ||||||||||
Sbjct 238 AACGCCCAAGGAGAACATACCGCACT-AGTTAATTTGGAG--C-------TAGAAACTGA 287
Query 354 AATCGTATTTCACCAAGAGCATGACGACGGGAAGAATTGCATCGTCTTCTTCGACGGAGA 413
| | | ||||||| |||||||| ||| |||||| |||||||||||||||||||||| |||
Sbjct 288 AGTTGGATTTCACGAAGAGCATAACGGCGGGAACAATTGCATCGTCTTCTTCGACGAAGA 347
Query 414 ACAAGG 419
||||||
Sbjct 348 ACAAGG 353
Score = 298 bits (161), Expect = 1e-79
Identities = 207/229 (90%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 950 AAGGAGTTGAGGGGTTAAAGATTCAGCCAAACCCTCAAGTGGAAGCTACAGGCGATTCCA 1009
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 914 AAGGTGTCGAGGGGTTAAAGATTCAGCCAAACCCTCAAGAGGAAGCTACAGGCGATTCCA 973
Query 1010 ATTGGTTCAGTTCAATATTTGGCCTCAACAAAAAGGAATCAGCTATTCAGCAAGGTGGGG 1069
||||||||| ||||||||| ||| | |||||||| ||||||||| |||||||||||||||
Sbjct 974 ATTGGTTCAATTCAATATTCGGCTTTAACAAAAAAGAATCAGCTGTTCAGCAAGGTGGGG 1033
Query 1070 CATCATCTAGTGTCTTGGAAGCTAATCCGCCACCACGTGAGTCCATTGTCCCAGTAGTTA 1129
|||||||||||||| ||||||||||||||| | |||| || | ||||||||||||||
Sbjct 1034 CATCATCTAGTGTCCCGGAAGCTAATCCGCCTC---GTGAATCTAGTGTCCCAGTAGTTA 1090
Query 1130 ATCCATCGCGTGGTAACCTAAGTCCTATGCGAAAGGATACGACAGGCTC 1178
|||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1091 ATCCGCCGCGTGGTAACCTAAGTCCTTTGGGAAAGGATACGACAGGCTC 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96101688135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5