BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27880.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889354 jgi|Araly1|889354|Al_scaffold_0007_1340 1613 0.0
> Ahg889354 jgi|Araly1|889354|Al_scaffold_0007_1340
Length=984
Score = 1613 bits (873), Expect = 0.0
Identities = 947/984 (96%), Gaps = 0/984 (0%)
Strand=Plus/Plus
Query 401 ATGGAGACAGATAGTATGGAGTGCGTCTCATCTACGGGTAATGAGATCCATCAGAATGGT 460
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1 ATGGAGACAGATAGTATGGAGTGCGTCTCGTCTACGGGGAATGAGATCCATCAGAACGGT 60
Query 461 AATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGAGCCGCTGCTGCC 520
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 61 AATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGTGCAGCAGCGGCC 120
Query 521 GCCGTCGTTACCAATATTGTTGGCCCAACAGCAACTGCTCCGGCCACTAGCGTGTATGAG 580
|||||||||||||||||||| || || || ||||||||||||||||||||||| ||||||
Sbjct 121 GCCGTCGTTACCAATATTGTCGGTCCGACGGCAACTGCTCCGGCCACTAGCGTATATGAG 180
Query 581 CTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAAT 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAAT 240
Query 641 GGACATACATTGTGCTCGACCTGTAAAGTGAGGGTTCATAACAGGTGTCCCACATGTAGA 700
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GGACACACATTGTGCTCGACCTGTAAAGTGAGGGTGCATAACAGGTGTCCCACATGTAGA 300
Query 701 CAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCGCTTGAGCTG 760
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCCCTTGAGCTG 360
Query 761 CCTTGCAAGTTTTACAATCTGGGATGTCCTGAGATCTTTCCTTACTACAGCAAACTGAAG 820
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 361 CCTTGCAAGTATTACAATCTCGGATGCCCTGAGATCTTTCCTTATTACAGCAAACTGAAG 420
Query 821 CACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCGGAGTGTGGT 880
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCCGAGTGTGGT 480
Query 881 ATCGTAGGGGACATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCATAAAGTTGACATG 940
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 ATCGTAGGGGATATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCACAAAGTTGACATG 540
Query 941 CACGCTGGTTCCACTTTTAACCACCGCTATGTCAAATCCAATCCGCGTGAAGTAGAGAAC 1000
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 541 CACGCTGGTTCCACTTTTAACCACCGCTACGTCAAATCAAATCCGCGTGAAGTAGAGAAC 600
Query 1001 GCTACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAGTACTTCTGCCTCCATTTCGAA 1060
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 601 GCAACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAATACTTCTGCCTCCATTTTGAA 660
Query 1061 GCGTTCCAGCTTGGGATGGGTCCAGTATACATGGCATTCCTGAGATTCATGGGGGACGAG 1120
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 661 GCATTCCAGCTTGGGATGGGTCCGGTATACATGGCCTTCCTGAGATTCATGGGGGACGAG 720
Query 1121 GAAGATGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGGAGGAAGCTAACA 1180
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GAGGACGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGAAGGAAGCTAACA 780
Query 1181 TGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGAC 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGAC 840
Query 1241 GGTCTCATCATCCAAAGAAACATGGCTCTCTTTTTCTCCGGTGGAGACAGGAAAGAGCTT 1300
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 841 GGTCTCATCATCCAAAGAAACATGGCTCTCTTCTTCTCAGGCGGAGACAGGAAAGAGCTT 900
Query 1301 AAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCC 960
Query 1361 ATACCAAACCTATCTTCTTCCTGA 1384
|||||||||||||| |||||||||
Sbjct 961 ATACCAAACCTATCATCTTCCTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5