BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27890.1 Length=1077 Score E Sequences producing significant alignments: (Bits) Value Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1 1251 0.0 > Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1 Length=1007 Score = 1251 bits (677), Expect = 0.0 Identities = 839/913 (92%), Gaps = 27/913 (3%) Strand=Plus/Plus Query 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCC-TTTCACCGCAAG 59 ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCCGTTT-AGTGCAAG 59 Query 60 TTTTGATCCTTCAAACCCAATAGCGTTTTTGGAGAAAGTTCTTGATGTTATCGGGAAAGA 119 ||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| Sbjct 60 TTTCGATCCTTCAAACCCAATAGGGTTTTTGGAGAAAGTCCTTGACGTTATCGGGAAAGA 119 Query 120 GAGCAATTTTCTGAAGAAAGACACGGCTGAGAAGGAGATCGTGGCTGCTGTTATGGCTGC 179 |||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 120 GAGCAACTTTCTGAGGAAAGAAACGGCTGAGAAGGAGATCGTGGCTGCTGTTAGGGCTGC 179 Query 180 -GAAGCAGAGGTTGAGGGAAGCGGAGAAGAAGAAGTTGGAGAAGGAGAGTGTT------A 232 ||| |||||||||||||||| ||||||||||||||||||||||||| |||| | Sbjct 180 AAAAG-AGAGGTTGAGGGAAGCCGAGAAGAAGAAGTTGGAGAAGGAGAATGTTAAGCCGA 238 Query 233 ---AGTCCATGGAGGTTGAGAAGCCAAAGAAAGATAGCTTGAAGCCCACGGAGCTGGAGA 289 || ||||||||||||||||| ||||||| |||||||||||| |||| | || | Sbjct 239 CGGAGCCCATGGAGGTTGAGAAGGCAAAGAAGGATAGCTTGAAGGCCAC---G--GG-G- 291 Query 290 AGCCGAAGGAGGAGAGCTTGATGGCGACTGATCCCATGGAGATTGAGAAGCCTAAAGAGG 349 ||| | ||||| | | || |||||| |||||||||||| |||||||||| || |||| Sbjct 292 -GCC-ATGGAGGTG-G--AGAAGGCGACGGATCCCATGGAGGTTGAGAAGCCCAAGGAGG 346 Query 350 AGAAAGAATCGGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 409 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 AAAAAGAATCTGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 406 Query 410 CATGGGGACAGAATCTCCAAGAGGTCACAATTAACATTCCAATGCCGGAAGGCACTAAAT 469 |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| Sbjct 407 CATGGGGACAGAATCTTCAAGAGGTCACAATTAACATTCCAGTGCCAGAAGGCACTAAAT 466 Query 470 CAAGGTCTGTTACCTGTGAAATCAAGAAGAACCGTCTCAAAGTTGGTCTCAAAGGGCAAG 529 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 467 CAAGATCTGTTACCTGTGAAATCAAGAAGAACCGTCTGAAAGTTGGTCTCAAAGGGCAAG 526 Query 530 ACCTAATCGTCGATGGAGAATTCTTCAATTCTGTCAAGCCTGACGACTGCTTCTGGAATA 589 | |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 527 ATCTAATCATCGATGGAGAATTCTTCACTTCTGTCAAGCCTGACGACTGCTTCTGGAATA 586 Query 590 TCGAGGATCAAAAGATGATATCGGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 649 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 587 TCGAGGATCAAAAGATGATATCAGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 646 Query 650 AGTATTGTGTGAAGGGAGAACCTGAGATAGACACTCAGAAAGTTGAACCAGAGACCAGCA 709 | ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 647 AATATTGTGTGAAGGGAGAACCTGAAATAGACACTCAGAAAGTTGAACCAGAGAGCAGCA 706 Query 710 AACTT-GGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 768 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 AA-TTGGGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 765 Query 769 AGGCAGAAGCAGATGGGACTACCAAGGAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 828 ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 766 AGGCAAAAGCAGATGGGACTCCCAACAAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 825 Query 829 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAATGCAAAGTTTAACTGATGATCT 888 |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 826 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAACGCAATGTTTAAATGATGATCT 885 Query 889 TTATCCAACTCTT 901 |||| |||||||| Sbjct 886 TTATTCAACTCTT 898 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40105308684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5