BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27890.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1 1251 0.0
> Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1
Length=1007
Score = 1251 bits (677), Expect = 0.0
Identities = 839/913 (92%), Gaps = 27/913 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCC-TTTCACCGCAAG 59
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCCGTTT-AGTGCAAG 59
Query 60 TTTTGATCCTTCAAACCCAATAGCGTTTTTGGAGAAAGTTCTTGATGTTATCGGGAAAGA 119
||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 60 TTTCGATCCTTCAAACCCAATAGGGTTTTTGGAGAAAGTCCTTGACGTTATCGGGAAAGA 119
Query 120 GAGCAATTTTCTGAAGAAAGACACGGCTGAGAAGGAGATCGTGGCTGCTGTTATGGCTGC 179
|||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 120 GAGCAACTTTCTGAGGAAAGAAACGGCTGAGAAGGAGATCGTGGCTGCTGTTAGGGCTGC 179
Query 180 -GAAGCAGAGGTTGAGGGAAGCGGAGAAGAAGAAGTTGGAGAAGGAGAGTGTT------A 232
||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 180 AAAAG-AGAGGTTGAGGGAAGCCGAGAAGAAGAAGTTGGAGAAGGAGAATGTTAAGCCGA 238
Query 233 ---AGTCCATGGAGGTTGAGAAGCCAAAGAAAGATAGCTTGAAGCCCACGGAGCTGGAGA 289
|| ||||||||||||||||| ||||||| |||||||||||| |||| | || |
Sbjct 239 CGGAGCCCATGGAGGTTGAGAAGGCAAAGAAGGATAGCTTGAAGGCCAC---G--GG-G- 291
Query 290 AGCCGAAGGAGGAGAGCTTGATGGCGACTGATCCCATGGAGATTGAGAAGCCTAAAGAGG 349
||| | ||||| | | || |||||| |||||||||||| |||||||||| || ||||
Sbjct 292 -GCC-ATGGAGGTG-G--AGAAGGCGACGGATCCCATGGAGGTTGAGAAGCCCAAGGAGG 346
Query 350 AGAAAGAATCGGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 409
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAAAAGAATCTGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 406
Query 410 CATGGGGACAGAATCTCCAAGAGGTCACAATTAACATTCCAATGCCGGAAGGCACTAAAT 469
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 407 CATGGGGACAGAATCTTCAAGAGGTCACAATTAACATTCCAGTGCCAGAAGGCACTAAAT 466
Query 470 CAAGGTCTGTTACCTGTGAAATCAAGAAGAACCGTCTCAAAGTTGGTCTCAAAGGGCAAG 529
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 467 CAAGATCTGTTACCTGTGAAATCAAGAAGAACCGTCTGAAAGTTGGTCTCAAAGGGCAAG 526
Query 530 ACCTAATCGTCGATGGAGAATTCTTCAATTCTGTCAAGCCTGACGACTGCTTCTGGAATA 589
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 ATCTAATCATCGATGGAGAATTCTTCACTTCTGTCAAGCCTGACGACTGCTTCTGGAATA 586
Query 590 TCGAGGATCAAAAGATGATATCGGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 649
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 587 TCGAGGATCAAAAGATGATATCAGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 646
Query 650 AGTATTGTGTGAAGGGAGAACCTGAGATAGACACTCAGAAAGTTGAACCAGAGACCAGCA 709
| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 647 AATATTGTGTGAAGGGAGAACCTGAAATAGACACTCAGAAAGTTGAACCAGAGAGCAGCA 706
Query 710 AACTT-GGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 768
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AA-TTGGGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 765
Query 769 AGGCAGAAGCAGATGGGACTACCAAGGAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 828
||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 766 AGGCAAAAGCAGATGGGACTCCCAACAAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 825
Query 829 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAATGCAAAGTTTAACTGATGATCT 888
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 826 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAACGCAATGTTTAAATGATGATCT 885
Query 889 TTATCCAACTCTT 901
|||| ||||||||
Sbjct 886 TTATTCAACTCTT 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5