BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27900.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945248 jgi|Araly1|945248|scaffold_701477.1 1254 0.0
Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1 198 7e-50
> Ahg945248 jgi|Araly1|945248|scaffold_701477.1
Length=823
Score = 1254 bits (679), Expect = 0.0
Identities = 766/807 (95%), Gaps = 9/807 (1%)
Strand=Plus/Plus
Query 197 AGAGCAAGAGATTAAGAAATGTATGCAGAAACTAGCTTAGCTTTCCGATTCATGCAGAGT 256
||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 3 AGAGCAAAAGAATAAGAAATGTATGCACAAACTGGCTTAGCTTTCCGATTCATGCAGAG- 61
Query 257 TCTTCTTCTCCAGAGATTCACCAATTTGAAGACCTCTTTAAATCCTACAAGCTCTCTGAT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 --TTCTTCTCCAGAGATTCACCAATTTGAAGACCTCTTTAAATCCTACAAGCTCTCTGAT 119
Query 317 GAAATGAACAATCTTGTTGAGGCAAGTGAGTATGATTTTGGAGAAGAGAGTGACCTATTC 376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 GAAATGAACAATCTTGTTGAGGCATGTGAGTATGATTTTGGAGAAGAGAGTGACCTATTC 179
Query 377 AAAGCCCCTGAGCCGATTATTGAAGAACCAATGTTAGCTGTTGATCCCCTCTCTCAAGAG 436
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 180 AAAGCCCCTGAGCCGATCATTGAAGAACCAATGCTAGCTGTTGATCCTCTCTCTCAAGAG 239
Query 437 CTTGTTGAACTCGGTGATCTCGGGTCGTTGCAGAGTGACCAACAGCTTATAGACAAGGCT 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTTGTTGAACTCGGTGATCTCGGGTCGTTGCAGAGTGACCAACAGCTTATAGACAATGCT 299
Query 497 TTCTACGACTGTGAGCAGGACCTCCTGGTGAAATCAGCCATGGAGTCTCCGCTCTCCGAG 556
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 300 TTCTACGAGTGTGAGCAGGACCTCCTGGTCAAATCAGCTATGGAGTCTCCGCTCTCCGAG 359
Query 557 GTACTAGACATCAAGAACATCTCTTTAGTGGCAAAAATGGACAAC-GATGTGAAGAGTAC 615
||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 360 GTACTAGACATCAAGAACATCTCTTTAGTTGCAAAAATGGACA-CTGATGTGAAGAGTA- 417
Query 616 G-AGTGTAGTCGTCTCTGATGTCCCAATTCCGAAGAGTGTGAGCTCGGGAAACTTGAGCT 674
| ||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 418 GTAGTGTGGTCGTCTCTGATGTCCCAATCCCAAAGAGTGTGAGCTCGGGAAACCTGAGCT 477
Query 675 CAATGGATATGGT-CGAGCACAAGGATGCGGTGATTCAGGGATTCCCTGATTTCCCTCCA 733
||||||||||||| | ||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 478 CAATGGATATGGTAC-AGCACGAGGATGCGGTGATTCAGAGCTTCCCTGATTTCCCTCCA 536
Query 734 GTGGATTATGGGATGAGAAGAGCCTTCAGTGAAAGCGATATACAGACACTGGGGACTGGA 793
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 537 GTGGATTATGGCATGAGAAGAGCCTTTAGTGAAAGCGATATACAGACACTGGGAACTACA 596
Query 794 AATACGGGTCTTGTTCAGTCTCAGTTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 853
||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AATGCGGGTCTTGTCCAGTCTCAGCTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 656
Query 854 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAAGCGAAATTTCGGGCGTAAA 913
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAA 716
Query 914 ATCAAGTATGCTTGTAGGAAGGCACTTGCAGACAGTCAACCGAGGATCCGAGGAAGGTTT 973
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 717 ATCAAGTATGCTTGCAGGAAGGCACTTGCAGATAGTCAACCGAGGATCCGAGGAAGGTTT 776
Query 974 GCAAAAACAGAGGAGATGCAGAAATGA 1000
|| ||||||||||||||||||||||||
Sbjct 777 GCGAAAACAGAGGAGATGCAGAAATGA 803
> Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1
Length=1158
Score = 198 bits (107), Expect = 7e-50
Identities = 169/198 (85%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 795 ATACGGGTCTTGTTCAGTCT-CAGTTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 853
|||| |||||||| || ||| || ||||| | || || | || || || || |||||
Sbjct 745 ATACAGGTCTTGTCCA-TCTCCA--TGGATAGGATTATTGTGAGCTGTACTTCAGAGGAT 801
Query 854 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCA-AGCGAAATTTCGGGCGTAA 912
||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 802 CGCCGTGAGAAGCTTTCTCGATACAAGAACAAGAAGAGCAGA-CGAAATTTCGGGCGTAA 860
Query 913 AATCAAGTATGCTTGTAGGAAGGCACTTGCAGACAGTCAACCGAG-GATCCGAGGAAGGT 971
||||||||||||||| ||||| || |||||||| || ||||| || | ||||||||||||
Sbjct 861 AATCAAGTATGCTTGCAGGAAAGCTCTTGCAGATAGCCAACCTAGAG-TCCGAGGAAGGT 919
Query 972 TTGCAAAAACAGAGGAGA 989
|||| |||||||||||||
Sbjct 920 TTGCGAAAACAGAGGAGA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5