BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27950.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945244 jgi|Araly1|945244|scaffold_701473.1 1509 0.0
> Ahg945244 jgi|Araly1|945244|scaffold_701473.1
Length=1050
Score = 1509 bits (817), Expect = 0.0
Identities = 974/1046 (93%), Gaps = 26/1046 (2%)
Strand=Plus/Plus
Query 116 AGGTGATGATGATGGATGAGTTTATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 175
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 19 AGG-GATGTTGATGGATGAGTATATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 77
Query 176 CTGTTATCAGAAAGTACACTAAAAAGTCGTCTATGGAGAGGAAGACCAGTGTTCGTGACT 235
||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||
Sbjct 78 CTGTTATCAGAAAGTACACTAAAAAGTCGTCCCTAGAGAAGAAGACCAGTGGTCGTGACT 137
Query 236 CGGCCAGGTTGGTTCGGGTCTCAATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 295
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 138 CGGCGAGGTTGGTTCGGGTGTCTATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 197
Query 296 AGGAAGAGTTTCTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 355
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AGGAGGAGTTTTTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 257
Query 356 AGCCTAGCAGCTCTTCCACCGGCGACGTCTCTGCTTCTCCGACGAAGGACCGGAAAAGAA 415
||||| ||||| ||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 258 AGCCT---AGCTCCTCCTCCGGCGACGTCTCTGCTTCTCCGATGAAGGACAGGAAAAGAC 314
Query 416 TCAACGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCCGGCCAAAACCAGAAGAAGTACC 475
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 315 TCACCGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCTGGCCAAAACCAGAAGAAGTACC 374
Query 476 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCTGAGCAAC 535
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 375 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCGGAGCAAC 434
Query 536 GCCGGAGAATCTGGCTCGGTACTTTTGCAACGGCGGAGGAAGCTGCCATCGTCTACGACA 595
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 435 GCCGGAGAATCTGGCTCGGTACTTTTGCAACAGCGGAGGAAGCTGCTGTCGCCTACGACA 494
Query 596 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACAACCAGAAC 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 495 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACCACCAGAAC 554
Query 656 CAGAACCGGTAC---AA--G-AACAAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 709
| ||||| | || || | ||| |||||||||||||||||||||||||||||||||||
Sbjct 555 CCGAACCAGAACCCGAACCGGAACCAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 614
Query 710 TATCAGAATCAATGGACGATTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 769
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TATCAGAATCAATGGACGACTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 674
Query 770 AAACATATGTCTCGGAGGAACCAATCGATAGTCTTATCAAACCGGTTAAACAAGAGTTTC 829
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 675 AAACATATGTCTCGGAGGAGCCAATCGATAATCTTATCAAACCGGTTAAACAAGAGTTTC 734
Query 830 TTGAACCAGAACAAGAGCCAATAAGCTGGCATCTTGGAGAAGGTAATA-CTAATACTAAT 888
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | |
Sbjct 735 TTGAACCAGAACAAGAACCAATAAGCTGGCATCTTGGAGAAGGTAATAAC-AATA-T--T 790
Query 889 GATGATTCATTTCCATTGGACATTACATTTCTCGACAACTATTTCAATGAATCATTACCA 948
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 791 GATGATTCATTTCCATTGGACATTCCATTTCTCGACAACTATTTCAATGAATCACTACCC 850
Query 949 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAACCAACAGAGAATGATTTCTTC 1008
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 851 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAA--A-CAGAGAATGATTTGTTC 907
Query 1009 AACGACCTTATGTTATTCGATAGCAACG-CA--GAAGA-ATACTACTCCTCCGAGATCAA 1064
|||||||||||||| || |||| |||| || ||||| | || |||| ||||| |||||
Sbjct 908 AACGACCTTATGTTGTTTGATAACAACAACACAGAAGACA-ACGACTCTTCCGATATCAA 966
Query 1065 AGAGATTGGTTCA-TCGTTCAACGATCTTGATGATTCTTTGATATCCGATCTCTTACTTG 1123
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 967 AGAGATTGGTTCAAT-GTTCAACGATCTTGATGATTCTTTGATATCCGATCTTTTACTTG 1025
Query 1124 TGTGATATTTTTGCCATTAACCAAAC 1149
||||||||||||||||| ||| ||||
Sbjct 1026 TGTGATATTTTTGCCAT-AACAAAAC 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5