BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27950.1 Length=1291 Score E Sequences producing significant alignments: (Bits) Value Ahg945244 jgi|Araly1|945244|scaffold_701473.1 1509 0.0 > Ahg945244 jgi|Araly1|945244|scaffold_701473.1 Length=1050 Score = 1509 bits (817), Expect = 0.0 Identities = 974/1046 (93%), Gaps = 26/1046 (2%) Strand=Plus/Plus Query 116 AGGTGATGATGATGGATGAGTTTATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 175 ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 19 AGG-GATGTTGATGGATGAGTATATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 77 Query 176 CTGTTATCAGAAAGTACACTAAAAAGTCGTCTATGGAGAGGAAGACCAGTGTTCGTGACT 235 ||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| Sbjct 78 CTGTTATCAGAAAGTACACTAAAAAGTCGTCCCTAGAGAAGAAGACCAGTGGTCGTGACT 137 Query 236 CGGCCAGGTTGGTTCGGGTCTCAATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 295 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 138 CGGCGAGGTTGGTTCGGGTGTCTATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 197 Query 296 AGGAAGAGTTTCTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 355 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 198 AGGAGGAGTTTTTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 257 Query 356 AGCCTAGCAGCTCTTCCACCGGCGACGTCTCTGCTTCTCCGACGAAGGACCGGAAAAGAA 415 ||||| ||||| ||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct 258 AGCCT---AGCTCCTCCTCCGGCGACGTCTCTGCTTCTCCGATGAAGGACAGGAAAAGAC 314 Query 416 TCAACGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCCGGCCAAAACCAGAAGAAGTACC 475 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 315 TCACCGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCTGGCCAAAACCAGAAGAAGTACC 374 Query 476 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCTGAGCAAC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 375 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCGGAGCAAC 434 Query 536 GCCGGAGAATCTGGCTCGGTACTTTTGCAACGGCGGAGGAAGCTGCCATCGTCTACGACA 595 ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 435 GCCGGAGAATCTGGCTCGGTACTTTTGCAACAGCGGAGGAAGCTGCTGTCGCCTACGACA 494 Query 596 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACAACCAGAAC 655 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 495 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACCACCAGAAC 554 Query 656 CAGAACCGGTAC---AA--G-AACAAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 709 | ||||| | || || | ||| ||||||||||||||||||||||||||||||||||| Sbjct 555 CCGAACCAGAACCCGAACCGGAACCAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 614 Query 710 TATCAGAATCAATGGACGATTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 769 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 615 TATCAGAATCAATGGACGACTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 674 Query 770 AAACATATGTCTCGGAGGAACCAATCGATAGTCTTATCAAACCGGTTAAACAAGAGTTTC 829 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 675 AAACATATGTCTCGGAGGAGCCAATCGATAATCTTATCAAACCGGTTAAACAAGAGTTTC 734 Query 830 TTGAACCAGAACAAGAGCCAATAAGCTGGCATCTTGGAGAAGGTAATA-CTAATACTAAT 888 |||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | | Sbjct 735 TTGAACCAGAACAAGAACCAATAAGCTGGCATCTTGGAGAAGGTAATAAC-AATA-T--T 790 Query 889 GATGATTCATTTCCATTGGACATTACATTTCTCGACAACTATTTCAATGAATCATTACCA 948 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 791 GATGATTCATTTCCATTGGACATTCCATTTCTCGACAACTATTTCAATGAATCACTACCC 850 Query 949 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAACCAACAGAGAATGATTTCTTC 1008 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| Sbjct 851 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAA--A-CAGAGAATGATTTGTTC 907 Query 1009 AACGACCTTATGTTATTCGATAGCAACG-CA--GAAGA-ATACTACTCCTCCGAGATCAA 1064 |||||||||||||| || |||| |||| || ||||| | || |||| ||||| ||||| Sbjct 908 AACGACCTTATGTTGTTTGATAACAACAACACAGAAGACA-ACGACTCTTCCGATATCAA 966 Query 1065 AGAGATTGGTTCA-TCGTTCAACGATCTTGATGATTCTTTGATATCCGATCTCTTACTTG 1123 ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 967 AGAGATTGGTTCAAT-GTTCAACGATCTTGATGATTCTTTGATATCCGATCTTTTACTTG 1025 Query 1124 TGTGATATTTTTGCCATTAACCAAAC 1149 ||||||||||||||||| ||| |||| Sbjct 1026 TGTGATATTTTTGCCAT-AACAAAAC 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48263612922 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5