BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27960.2
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945243 jgi|Araly1|945243|scaffold_701472.1 824 0.0
Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028 617 3e-176
> Ahg945243 jgi|Araly1|945243|scaffold_701472.1
Length=500
Score = 824 bits (446), Expect = 0.0
Identities = 476/491 (97%), Gaps = 0/491 (0%)
Strand=Plus/Plus
Query 207 GGATTTTGGAAATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATC 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GGATTTTGGATATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATC 69
Query 267 CTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTA 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 70 CTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCTACGA 129
Query 327 TAATGGGTCCATCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCC 386
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 TAATGGGTCCATCGGAAAGCCCTTATTCTGGAGGAGTTTTCCTTGTAACCATCCATTTCC 189
Query 387 CTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAA 249
Query 447 ACATTAACAGCAATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTC 506
||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 250 ACATTAATAGCAATGGGAGCATCTGTCTCGACATCTTGAAGGAGCAGTGGAGCCCTGCTC 309
Query 507 TCACAATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATG 566
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 310 TGACAATTTCCAAGGTGCTGCTATCTATCTGTTCTTTGTTAACGGATCCAAACCCGGATG 369
Query 567 ATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCA 429
Query 627 CTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAAATACTGTCCTTAAGGAA 686
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 430 CTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAGATGCTGTCCTTGAGGAA 489
Query 687 GAGCCCTAATA 697
|||||||||||
Sbjct 490 GAGCCCTAATA 500
> Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028
Length=447
Score = 617 bits (334), Expect = 3e-176
Identities = 408/445 (92%), Gaps = 0/445 (0%)
Strand=Plus/Plus
Query 218 ATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTCCTACTTCA 277
||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60
Query 278 TGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTATAATGGGTCCA 337
||||||||||| || ||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120
Query 338 TCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCCCTCCAGATTAC 397
|| || || |||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180
Query 398 CCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACATTAACAGC 457
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240
Query 458 AATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTCACAATTTCC 517
|| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300
Query 518 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATGATCCTTTGGTC 577
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360
Query 578 CCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACTGCTCGGACC 637
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420
Query 638 TGGACCCAAAAGTATGCCATGGGCT 662
||||| || ||||||||||||||||
Sbjct 421 TGGACTCAGAAGTATGCCATGGGCT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5