BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27970.1
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354000 jgi|Araly1|354000|fgenesh1_pg.C_scaffold_7001173 2368 0.0
> Ahg354000 jgi|Araly1|354000|fgenesh1_pg.C_scaffold_7001173
Length=1551
Score = 2368 bits (1282), Expect = 0.0
Identities = 1474/1565 (94%), Gaps = 19/1565 (1%)
Strand=Plus/Plus
Query 11 ATGAATAATCCAAGATCGGTTAGTCCTTTGGTTTCTCCAGCAAACCACTCAGATCTATTA 70
|||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 1 ATGAATAATCCAAGATCGGTAAGTCCTTTGGTTTCTCCAGCAAACCAC-C----C----A 51
Query 71 GAAAACCAACGTCAATCCGGTT-CTGGAGATTTCTCAAGATTAGAGAAACGAATCGGAGC 129
| | |||||||||||| ||| | ||||| |||||||||||||||||||||| ||||||
Sbjct 52 G---ATCAACGTCAATCCAGTTGC-GGAGAATTCTCAAGATTAGAGAAACGAAACGGAGC 107
Query 130 GAGG-A-A-GATGAAGTTTCATTCCAAGTCTATGCCCCGAGGTGCCATGTTTCTTGATCA 186
||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 108 AAGGAAGATGATGAAGTTTCATTCCAAGTCCATGCCCCGAGGTGCCATGTTTCTTGATCA 167
Query 187 AGAAGCATCTAGAAACTTCCACGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 246
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 168 AGAAGCTTCTAGAAACTTCCATGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 227
Query 247 ACTCGAACGTCAGATATCGAATTTACGTGGGAAACCCACTGAGAGTTCGTTGCAGGATCA 306
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 228 GCTCGAACGTCAGATATCGAATTTACGGGGGAAACCCACTGAGTGTTCGTTGCAGGATCA 287
Query 307 TAAAGAGATTACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 366
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TAAAGAGATCACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 347
Query 367 GCTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTCTGCCTGAGGACAAAACGTGGCCGTT 426
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 348 ACTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTTTGCCAGAGGACAAAACGTGGCCGTT 407
Query 427 TCTTCTACGGTTTCCAATCACATCATATGGGATGTGTCTTGGAGTAAGTAGTCAAGCCAT 486
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 408 TCTTCTGCGGTTTCCAATCACATCGTATGGGATGTGTCTTGGAGTAAGCAGTCAAGCCAT 467
Query 487 CATGTGGAAGACCTTAGCAACCACAGAGGCAGAGAAGTTCTTGCACGTGACTCAAGTGAT 546
||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 468 CATGTGGAAGACCTTAGCAACCACAAACGCCGAGAAGTTCTTGCACGTGACACAAGTGAT 527
Query 547 CAACCACGTGCTCTGGTGGATCTCTCTCCTTCTCCTCCTCGCCGTTTCTATCACTTACCT 606
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 528 CAACCACGTGCTCTGGTGGATCTCCCTCCTTCTCCTCCTCGCCGTCTCTATCACTTACCT 587
Query 607 CTTCAAAACCATCCTCTTCTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCGATCCGAGT 666
| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 588 CCTCAAAACCATCCTCTACTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCAATCCGAGT 647
Query 667 CAACTTCTTCTTCGCTCCTCTTATATCAATCCTCTTCTTGGCACTTGGAATCCCACACTC 726
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 648 CAATTTCTTCTTCGCTCCTCTCATATCAATCCTCTTCTTGGCGCTTGGAATCCCACACTC 707
Query 727 TATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 767
Query 787 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAAAGACGCCTCTCCAAAGTCGC 846
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 768 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAACGACGCCTCTCCAAAGTCGC 827
Query 847 CAACCCTACAAACCACCTTTCCATTGTCGGTAACTTTGCAGGAGCACTTCTAGGAGCATC 906
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 828 TAACCCTACAAACCACCTTTCGATTGTCGGTAACTTTGCCGGAGCACTTCTAGGAGCATC 887
Query 907 CATGGGGTTGAAAGAAGGACCAATATTCTTCTTTGCCATAGGG-TTGGCTTATTATTTGG 965
|||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||
Sbjct 888 CATGGGGTTGAAAGAAGGACCAATGTTCTTCTTTGCTGT-GGGATTGGCATATTATTTGG 946
Query 966 TTTTATTTGTGACTCTCTATCAGAGACTTCCCACGAATGAAACCTTACCTAAAGAGCTTC 1025
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 947 TCTTATTTGTGACTCTCTATCAGAGACTTCCCACTAACGAAACCTTACCTAAAGAGCTTC 1006
Query 1026 ACCCTGTTTTCTTCCTCTTTGTGGCTGCACCAGCCGTCGCTTCCATGGCCTGGACCAAGA 1085
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1007 ACCCTGTTTTTTTCCTCTTTGTGGCTGCACCGGCTGTCGCTTCCATGGCCTGGACCAAGA 1066
Query 1086 TCTCTGCCTCTTTCGATCTCGGTTCGCGTCTAGCATACTTCATCTCCTTGTTCTTGTACT 1145
|||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1067 TCTCTGCCTCTTTCGATCTCGGCTCGCGCCTGGCTTACTTCATCTCCTTGTTCTTGTACT 1126
Query 1146 TCTCTCTGGTTTGTCGGATTAACCTTTTCCGGGGATTCAAATTCTCGCTAGCTTGGTGGG 1205
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1127 TCTCTCTGGTTTGTCGGATTAACTTTTTCCGTGGATTCAAATTCTCGCTAGCTTGGTGGG 1186
Query 1206 CTTACACGTTTCCAATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CTTACACGTTTCCGATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1246
Query 1266 CGGGAGTGGCAACGAAGATACTATCGGTTGTGATGTCGGGAGCAGCAACTCTGACGGTGA 1325
||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 1247 CGGGAGTAGCAACTAAGATACTGTCGGTTGTGATGTCGGGAGCAGCAACTTTGACAGTGA 1306
Query 1326 TAGCTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1385
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TAGGTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1366
Query 1386 ACGTTGTCATTGCCATAAGTGCAGAACAACCGAAGCAGAAGAGATGGTTCAAACATCTCA 1445
|||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 1367 ACGTCGTCATTGCCATAAGTGCAGAGCAACCGAAGCAGAGGAGATGGTTCAAACAGCTCA 1426
Query 1446 CAAAAGAAAGTTATGGAAATAATGAGAGATGTCCCAAGATTTTGGATCCGGAAGATAATC 1505
|||||||||||| | |||||| ||||||||||| |||| ||||||| |||||||||| ||
Sbjct 1427 CAAAAGAAAGTTCTAGAAATAGTGAGAGATGTCTCAAGGTTTTGGACCCGGAAGATAGTC 1486
Query 1506 AAATAGATTTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTTCAGAATTCAA 1565
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1487 AAATAGATCTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTGCAGAATTCAA 1546
Query 1566 ATTAA 1570
|||||
Sbjct 1547 ATTAA 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58811338280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5