BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27980.1
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491985 jgi|Araly1|491985|fgenesh2_kg.7__1418__AT4G27980.1 2477 0.0
> Ahg491985 jgi|Araly1|491985|fgenesh2_kg.7__1418__AT4G27980.1
Length=1821
Score = 2477 bits (1341), Expect = 0.0
Identities = 1676/1835 (91%), Gaps = 33/1835 (2%)
Strand=Plus/Plus
Query 1 ATGGCAATGCAAGGGGATTCAGTAGAATCAGACGTTACTGAGC-AAAACAGTGAAGGGTA 59
|||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1 ATGGTAATGGGAGGGGATTCAGTAGAATCAGACGTTACTGAGCTAAAA-AGTGAAGGGTA 59
Query 60 TCTCAAAATCCTAGACAAGATTCAGGCAAAATCTTCATCAATTTTTGAGTTTTCGCTTCA 119
| |||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 60 TTTCAAAATCCTAGACCAGATTCATGAAAAAGCTTCATCAATTTTTGAGTTTTCGCTTCA 119
Query 120 GTTTGATGACGT-GGTCGCCTCGCTGGAGAAGAAGGAAGAACGACTGAGAGTGGTTGAAA 178
|||||||| || || | |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 120 CTTTGATGATGTCAGT-GACTCGCTGGAGAAGAGGGAAGAACGTCTGAGAGTGGTTGAAA 178
Query 179 TGAAGGAGAAGGAGATTGGTTTGCTTGAAGAGTCAATATCTCGAAGGTTAAGTGTTTTAG 238
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 179 TGAAGGAGAAGGAGATTGGTTTGCTTGAAGAGTCAGTATCTCGTAGGTTAAGTGTTTTAG 238
Query 239 AGGAGAAAGAGATTGAAACTGATTTGAGATTGGTCATTGAAGCAAGTATCATGAGATTGG 298
||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 AGGAGAAAGAGATAGAGTCTGATTTGAGATTGGTCATTGAAGCAAGCATCATGAGATTGG 298
Query 299 TGCTTGAGAAGCAGAGTGAAGATTTAGTGACACAACTTAAAACAGAGGAGAATAAGCTTG 358
|||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||
Sbjct 299 TGCTTGAGAAGCAGAGTGAATATGTAGTGACACACCTTAAAACACAGGAGAATAAGCTTG 358
Query 359 GTTTGTTTCTCCGTTCGACGACGAAGAAACTTGAGGAGCTGGTGAGTGAGTTTGATGGGA 418
||||| |||||| |||||| ||||| |||||||| || || ||||||||||||| || |
Sbjct 359 GTTTGCTTCTCCATTCGACAACGAAAAAACTTGAAGATTTGATGAGTGAGTTTGACGGAA 418
Query 419 GGAAAGAGGAGGCTTGCC-GAGTTTCTGAGAAGTTGTGTGAGTTAGAGAAGGCAGAGAAG 477
||||||||| ||||||| || ||| ||||||||| |||||| |||||||||||||||||
Sbjct 419 AGAAAGAGGAAGCTTGCCGGA-TTTTTGAGAAGTTTTGTGAGCTAGAGAAGGCAGAGAAG 477
Query 478 GAGTTTCATCTGAAACAAAGAGCTGAGACTGAGAGACGGAATGAGGAAAGTGAGGCAAGA 537
|||||| | ||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 478 GAGTTTGAAATGAAACAAAGAGCTGAGACTGAGAGACTGAACGAGGAAAGTGAAGCAAGG 537
Query 538 GAGAAGGATCTCAGGGCACTTGAGGAAGCTGTCAAAGAGAAGACTGCTGAATTGaagaga 597
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGAAGGAGCTCAGGGAACTTGAAGAAGCTGTCAAAGAGAAGACTGCTGAATTGAAGAGA 597
Query 598 aaggaggagactttggagctgaaga-tgaaagaagaagctgaaaaattgaga-gaggaga 655
|||||||||||||| |||||||| | |||||||||||||||| | ||||| | |||||||
Sbjct 598 AAGGAGGAGACTTTTGAGCTGAA-ACTGAAAGAAGAAGCTGACAGATTGA-ATGAGGAGA 655
Query 656 CTGAACTGATGAGAAAAGGTCTTGAGATTAAGGAGAAGACAT-TGGAAAAAAGATTGAAA 714
||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 656 CTGAACTGAAGAGAAAAGGTCTTGAGATTAAGGAGAAGAC-TCTGGAAAAAAGGCTGAAA 714
Query 715 GAGCTTGAATTGAAGCAGATGGAATTAGAAGAAACATCAAGACCACAACTTGTAGAAGCA 774
|||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 715 GAGCTTGAGCTGAAGCAGATGGAACTAGAAGAAAGATCAAGACCACAACTTGTGGAAGCA 774
Query 775 GAGTCTCGGAAGAGATCCAACCTTGAAATTGAACCTCCTTTGTTGGTAAAG-A--ATGAT 831
|||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 775 GAGTCTCGAAAGAGATCCAACCTTGAAATTGAACCTCCCTTGTTGGTAAAGAATGATGAT 834
Query 832 AGTGACGCTGATTCTT-GTACTCCTCAAGCCAAGAAACAGAAGTCTCAGGAAGCAAATGA 890
||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 835 AGTGACGTTGATT-TTCTTACTCCTCAAGCCAAAAAACAGAAGTCTCAGGAAGCAAATGA 893
Query 891 TGGAGACATTGAAGGAATTGTCTGCACAGATAAAAGTTATGAGGATCCT-AACTCATTAA 949
||||||||||||||||||||||||||||||| ||| | || |||||||| ||| || |||
Sbjct 894 TGGAGACATTGAAGGAATTGTCTGCACAGATGAAACTGATAAGGATCCTAAAC-CACTAA 952
Query 950 CTTGTCCT-GATACAAAGCTTAATGATTTTAGCAAGTCAATGAGCTCATTTGCTGTTGAT 1008
||||| || ||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 953 CTTGT-CTCGATACAAAGTTTAGTGATTTTAGCAAGTCAATGAGCTCTTTTGCTGTTGAT 1011
Query 1009 CAAGTATGGGCTTTATATGATCCTAGAGATGATATGCCTAGGAACTATGCCCAGATCAGG 1068
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1012 CAAGTATGGGCTTTATATGATCCTAGAGATGATATGCCTAGGACCTATGTCCAGATCAGG 1071
Query 1069 GAGATTTTTGAGTCCCAGTTGAGTTTGCAGGTGACACTACTTGAACATGTCAAAACTACA 1128
|| |||||||| |||||||||||||||||||||||| | |||| || |||||||||||||
Sbjct 1072 GAAATTTTTGACTCCCAGTTGAGTTTGCAGGTGACATTGCTTGGACCTGTCAAAACTACA 1131
Query 1129 AAAGATGAGCAGTCTATTCTCAGTGGTTGTGGGAGATTTGAATATGGAGATACAGAGATC 1188
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1132 ACAGGTGAGCAGTCTATTCTCAGTGGTTGTGGGAGATTCGAATATGGAGATACAGAGATC 1191
Query 1189 AAGAGCCACTTGATGTTTGCTCATGAGATGGATCACATCAAATCTGCTGAAGAG-GTCAT 1247
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1192 AAGAGCCACTTGATGTTTGCTCATGAGATGGATCACATCAAATGTGCTGA-GAATGTCAT 1250
Query 1248 TGTGAACCCGAGAAAAGGCGAAACATGGGCTCTTTTCAGTGATTGGAATGCAAGTTGGAA 1307
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1251 TGTCAACCCGAGAAAAGGCGAAACATGGGCTCTATTCAGAGATTGGAATGCAAGTTGGAA 1310
Query 1308 CAGTCA-CCTAGAACTACAGGAGCTTCCTTATAGATACGACTTTGTGGAAGTCATCTCCG 1366
|||||| || ||| || || |||| ||||||||||||||||||||| ||||||||||| |
Sbjct 1311 CAGTCAACC-AGATCTGCACGAGCCTCCTTATAGATACGACTTTGTTGAAGTCATCTCTG 1369
Query 1367 AGTTTGACGATCTTATAGGCATTCAAGTGGCCTATATGGGGAGAGTTGAAGGATACGAAT 1426
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1370 AGTTTGAAGATCTTATAGGCATTCTAGTGGCCTATATGGGGAGAGTTGAAGGATTTGAAT 1429
Query 1427 CGGTTTTTAACCATGCTGAGCAGTATGGATGCATCAAGATTGTGATCCCACCTGCGGAAA 1486
|||| ||||||| |||||||||| |||||| ||||||||||||||||||||| | |||||
Sbjct 1430 CGGTATTTAACCGTGCTGAGCAGCATGGATACATCAAGATTGTGATCCCACCAGGGGAAA 1489
Query 1487 TGCAGAGATTCTCTCACAAAGTTGAATCAGTGAAATTGAGCGGGAAGGAGGAAGAGGGAA 1546
|||||| ||||||||| ||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 1490 TGCAGAAATTCTCTCATAAAGTTGAATCTGTTAAATTGAGTGGAAAGGAGGAAGAAGGAA 1549
Query 1547 TCCCATTTAGGTCCTTCAAGCTAAACCCTGCTGCTATGCCGAGATACTATCATGTGCTTG 1606
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1550 TCCCATTTACGTCTTTCAAGCTAAACCCTGCTGCTATTCCGAGATACTATCATGTGCTTG 1609
Query 1607 AGGAGGTGGTGGAAACGGAAATACAAATTAAAGATCCAACGGTCGTACATCAAAATGGAT 1666
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 1610 AGGAGGTGGTGGAAACGAAAATACAAATTAAAGCTCCAACGGTTGTACATCAAAATGGTT 1669
Query 1667 CCACAAAAGATCTTCCCATAATAATAGATTGAGGGATTCAAGCCTGGTTGGTGCACCTTT 1726
||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 1670 CCACAAAAGATCTGCCCATAATAATAGATTGAGGGATTCAAGTCTGGTTGTT-CACCTTT 1728
Query 1727 CTTATCTATGCAAATATATATTTAAGTATGTAGAGTGCT--TGGTGATGGCTG-AG--GT 1781
||||||||||||||||||||| | |||||||||||| ||||||||||| || ||
Sbjct 1729 CTTATCTATGCAAATATATATATC--TATGTAGAGTGCCACTGGTGATGGCTTTAGATGT 1786
Query 1782 TGCAGGAAGTAGTGAAACTGTAATCTTTTTGGTTT 1816
|||||||||||||||||||||||||||||||||||
Sbjct 1787 TGCAGGAAGTAGTGAAACTGTAATCTTTTTGGTTT 1821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5