BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27990.1

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945240 jgi|Araly1|945240|scaffold_701469.1                        970    0.0  


> Ahg945240 jgi|Araly1|945240|scaffold_701469.1
Length=673

 Score =  970 bits (525),  Expect = 0.0
 Identities = 595/629 (95%), Gaps = 4/629 (1%)
 Strand=Plus/Plus

Query  74   CTCTTCGCGCTTCAATTCTCGCAAACCCTAGACTACctcctccgatcatccgtccccgtc  133
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  28   CTCTTCGCGCTTCAATTCTCGCAAACCCTAGTCTACCTCCTCCGATCCTCCGTCCCCGTC  87

Query  134  tctctcttccccgtaaactctctttcaatctctccctccATAACGCTAGAACCATCGTTT  193
            |||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| |
Sbjct  88   TCTCTCTTCCCCGTAAACCCTCATTCAATCTCTCCCTCCATAACCCTAGATCCATCGTCT  147

Query  194  CCTCCGCCGTTACCTCCTCGTCTCCGGTACTCTCCTCTAAACCCCCTTCTCAATTCCCCT  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  CCTCCGCCGTTACCTCCTCGTCTCCGGTACTCTCCTCTAAACCCCCTTCTCAATTCCCCT  207

Query  254  TCTCCGACTCAACTAGATCGATCACCACCCTCG-TGCTTCTAGCCGGCGTCGTAATCAAA  312
            ||||||||||||||||||||||||||||||||  | |||||||| |||||||||| ||||
Sbjct  208  TCTCCGACTCAACTAGATCGATCACCACCCTCTCT-CTTCTAGCTGGCGTCGTAACCAAA  266

Query  313  TCTCTAATTCAGAAGCTCTCTGTCGCAATTGTGAACCTATCTCCACAGATTCAAGCATCT  372
            || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct  267  TCCCTAATCCAGAAGCTCTCCGTCGCAATTGTAAACCTATCCCCACAGATTCAAGCATCT  326

Query  373  TTCCGAACAGCAAGTCCGTTGTTCTTCGCGTCGCTCCGTGATCGACCCGCCGGTTATCTG  432
             |||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  327  ATCCGAACAGTGAGTCCGTTGTTCTTCGCGTCGCTCCGTGACCGACCCGCCGGTTATCTG  386

Query  433  AACACTCCG-TTGACGGTAGTTGCAGCCGGGCTATCGAAATGGCTCGATATATACAGTGG  491
            ||||| ||  || || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  387  AACACGCCACTT-ACAGTAGTTGCAGCGGGGCTATCGAAGTGGCTCGATATATACAGTGG  445

Query  492  TGTTCTGATGGTCAGAGTTTTGCTCAGTTGGTTCCCAAACATTCCATGGGATCGTCAGCC  551
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  TGTTCTAATGGTCAGAGTTTTGCTCAGTTGGTTCCCAAACATTCCATGGGATCGTCAGCC  505

Query  552  TTTGTCAGCCATTAGAGATCTGTGTGATCCTTATCTTAATCTCTTCAGGAACATTATCCC  611
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  506  ATTGTCAGCCATTAGAGATCTGTGTGATCCTTATCTTAATCTCTTCAGGAACATTATTCC  565

Query  612  TCCAGTCTTTGATACGCTTGACGTTAGCCCTTTGCTTGCTTTCGCCGTTTTGGGAACTCT  671
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  566  TCCAGTCTTTGATACGCTTGACGTTAGCCCTTTGCTTGCTTTTGCCGTTTTGGGAACTCT  625

Query  672  AGGTTCGATTCTCAACAACAGCAGAGGAT  700
             |||||||||||||||||||||||| |||
Sbjct  626  CGGTTCGATTCTCAACAACAGCAGATGAT  654



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34120010715


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5