BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28000.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1 2220 0.0
Ahg491983 jgi|Araly1|491983|fgenesh2_kg.7__1416__AT4G28000.1 1685 0.0
> Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1
Length=2948
Score = 2220 bits (1202), Expect = 0.0
Identities = 2109/2538 (83%), Gaps = 98/2538 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCAGAAGAGCGTGTTGTTTTCCGCGTTAGGGGTTGGTGTTGGGTTAGGGATTGGT 60
||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 234 ATGGAGCAGAAGAGCGTGTTGTTATCAGCTTTAGGAGTTGGTGTTGGGTTAGGGATTGGT 293
Query 61 CTAGCGTCGGGTCAGAGTTTGGGTAA-ATGGGCAAACGGGTCTATTTCTGCGGAGGATGG 119
|||| || ||||| |||||||| || ||||||||||||||| ||||| || |||||
Sbjct 294 TTAGCATCAGGTCAAAGTTTGGG-AAGATGGGCAAACGGGTCGGGTTCTGTTGAAGATGG 352
Query 120 ACTAACCGGAGAAAAGATTGAGCAAGAGTTGGTTAGGCAGATCGTTGATGGCAGAGAGAG 179
||| ||||||||| ||||||||||||||||| | || || || |||||||| ||||||||
Sbjct 353 ACTCACCGGAGAACAGATTGAGCAAGAGTTGATGAGACAAATTGTTGATGGTAGAGAGAG 412
Query 180 TAGTGTCACTTTCGACGAGTTTCCTTATTACCTAAGTGAGAAAACTCG-GCTTTTATTGA 238
|| ||||||||| || |||||||| |||| | |||| ||| |||||| | || ||||
Sbjct 413 TACTGTCACTTTTGATGAGTTTCCGTATTTCTTAAGCAAGAGAACTCGAG-AATTGTTGA 471
Query 239 CAAGTGCAGCTTATGTTCACCT-AAAGCAATCTGATATCTCGAAGCACACGCGTAATCTT 297
||||||| ||||||||||| || |||| | | |||||| ||||||||||| || ||||||
Sbjct 472 CAAGTGCTGCTTATGTTCATCTAAAAG-AGTATGATATATCGAAGCACACTCGGAATCTT 530
Query 298 GCACCTG-GAAGTAAGGCCATTCTTCTGTCTGGACCTGCTGAATTCTATCAGCAAATGCT 356
||||||| | ||||| || |||||||| ||||| ||||| || || ||||||||||||||
Sbjct 531 GCACCTGCG-AGTAAAGCTATTCTTCTTTCTGGTCCTGCGGAGTTTTATCAGCAAATGCT 589
Query 357 TGCAAAAGCATTGGCTCATTACTTTGAATCGAAA-TTACTGTTACTAGATATAACCGACT 415
||||||||| ||| |||||||||||||||| ||| || |||| |||||||||| || |
Sbjct 590 TGCAAAAGCTTTGTCTCATTACTTTGAATC-AAAGCTATTGTTGTTAGATATAACTGATT 648
Query 416 TCTCTATCAAGATACAGAGCAAGTATGGATGCGTCAAGAAAGAACCTTCTCACAAGAGGT 475
||||||| ||||||||||| || ||||||||| ||||| |||||||| |||||||||||
Sbjct 649 TCTCTATTAAGATACAGAGTAAATATGGATGCACCAAGAGAGAACCTTTTCACAAGAGGT 708
Query 476 CTATTTCTGAGTTGACAATGGACAAAATGTCTAATTTGATGGGTT-CTATCTCTGTGCTC 534
||||||||||||| ||| | ||||||||||| | ||||||||||| || ||||| ||||
Sbjct 709 CTATTTCTGAGTTAACATTAGACAAAATGTCGAGTTTGATGGGTTCCT-TCTCTATGCTT 767
Query 535 TCCCAAAAG-GAAGCT--A-CAAGAGGGACCTTGCGTAGGCACACAAGTGGCAACGATCT 590
|| | || | |||| | | |||||||||| |||||| | ||||| ||||| || ||||
Sbjct 768 TCTC-AACGTGAAGTTGAACCAAGAGGGACATTGCGTCGACACACCAGTGGAAATGATC- 825
Query 591 TC-ATTCAAGGGGCT-TTGA-CGTTAC-AAGTCAG-CCTCCACGACTCAAGCGGAATGCT 645
|| | |||||| | | |||| | | | || || | |||||| ||| |||| | ||||||
Sbjct 826 TCAAATCAAGGAG-TATTGAGAGCT-CTAA-TC-GTCCTCCAAGACACAAGAGAAATGCT 881
Query 646 TCTGCTGCTTCTGATATGAGTAGCATATCATCCCGTTCTGCAACTTCTGTTTCAGCTTCA 705
||||||||||||||||| ||||| || || ||||| ||| ||| |||||||||||||||
Sbjct 882 TCTGCTGCTTCTGATATCAGTAGTATGTCTTCCCGCTCTTCAAGTTCTGTTTCAGCTTCC 941
Query 706 AGCAAACGCAGTGCTAACT-TGTGCTTT-GATGAGAGACTTTTCCTTCAGTCACTTTACA 763
|||| ||||||| | || | | || ||| || |||| ||||||||| |||||||||||||
Sbjct 942 AGCAGACGCAGTAC-AAATCTATG-TTTCGACGAGAAACTTTTCCTGCAGTCACTTTACA 999
Query 764 AGGTCTTGGTTTC-GATTTCAGAAACCAA-TCCTATAATAATATACCTGAGGGATGTTGA 821
|||||||||| || | | || |||| ||| ||| ||||||||||| |||| ||||||||
Sbjct 1000 AGGTCTTGGTGTCTG-TATCGGAAA-CAACTCCGCTAATAATATACTTGAGAGATGTTGA 1057
Query 822 GAAGCTT-TGTCAGTCAGAAAGGTTCTACAAGTTGTTCCAGAGGCTCTTG-ACGAAGCTT 879
||||||| | | |||||||||| ||||||||||||||||| ||||||||| || |||||
Sbjct 1058 GAAGCTTCT-TGAGTCAGAAAGATTCTACAAGTTGTTCCAAAGGCTCTTGAAC-AAGCTC 1115
Query 880 TCTGGCCCTGTTTTGGTTCTCGGCTCAAGACTATTGGAACCCGAAGATGACTGTCAAGAA 939
||||| || || ||| |||| ||||||||| |||| ||||||||||| || || ||||||
Sbjct 1116 TCTGGTCCGGTCTTGATTCTTGGCTCAAGAGTATTAGAACCCGAAGAAGATTGCCAAGAA 1175
Query 940 GTAGGAG-AGGGCATTTCTGCTTTGTTTCCTTACAACATCGAGATCAGACCGCCAGAGGA 998
||||| | |||| ||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1176 GTAGGCGAAGGG-ATTTCCGCTCTATTTCCTTACAACATCGAGATCAGACCACCAGAGGA 1234
Query 999 TGAAAATCAACTCATGAGCTGGAAAACGAGATTTGAAGATGACATGAAAGTGATACAGTT 1058
|||| ||| ||| ||||||||||| | | || ||||||||||||||| |||| || ||
Sbjct 1235 TGAATCTCAGCTCGTGAGCTGGAAATCTCGGTTAGAAGATGACATGAAAATGATTCAATT 1294
Query 1059 TCAAGACAACAAGAACCACATAGCCGAGGTTCTAGCGGCTAATGATCTTGAGTGTGATGA 1118
||||||||||||||||||||| || |||||||| || ||||||||| | |||| |||||
Sbjct 1295 TCAAGACAACAAGAACCACATTGCAGAGGTTCTTGCTGCTAATGATATCCAGTGCGATGA 1354
Query 1119 CTTAGGTTCCATATGCCATGCAGATACAATGT-TCCTAAGCAGTCACATTGAGGAAATTG 1177
||||| ||| |||||||| ||||||||||||| | | || | ||||||||||||||||
Sbjct 1355 CTTAGCTTCGATATGCCACGCAGATACAATGTGT-TTGAGTAACCACATTGAGGAAATTG 1413
Query 1178 TTGTTTCTGCAATCTCCTACCATCTGATGA-ACAACAAAGAACCCGAATACAAAAACGGG 1236
| |||||||||||| | || ||| |||| | ||| ||||||||| ||||||| ||||||
Sbjct 1414 TGGTTTCTGCAATCACTTATCATTTGAT-ACACACCAAAGAACCGGAATACAGAAACGGA 1472
Query 1237 AGGCTTGTAATATCTTCTAATAGCTTGTCCCATGGAC-TGAATATATTACAGGAAGGT-- 1293
| ||||||||||||||| || || ||||| ||||||| || |||||| || ||||||
Sbjct 1473 AAGCTTGTAATATCTTCCAAAAGTTTGTCTCATGGACTTG-GTATATTCCAAGAAGGTGG 1531
Query 1294 CAA-GGATGC-TTTGAGGACTCCTTGAAGCTGGACACAAACATC-GACTCCAAG-GTAGA 1349
|| ||| | || || |||||||||||||| |||||||||| | ||||| ||| | | |
Sbjct 1532 AAACAGAT-CATTCGAAGACTCCTTGAAGCTAGACACAAACA-CTGACTCTAAGCG-AAA 1588
Query 1350 AGAAGGTGAAGGGAT-AACAAAGAGCGAGTCAAAATCTGAGACAACTGTTCCGGAAAACA 1408
|||||| ||| | || ||||||| ||||| |||||| | | ||| |||||||
Sbjct 1589 AGAAGGAGAA-GTATGTTCAAAGAGTGAGTCGAAATCT--G------G-TCCTGAAAACA 1638
Query 1409 AAAATGAATCGGATACATCAATCCCGGC-AGCAAAAAATG--AATGCCCCCTGCCTCCGA 1465
|||| || || || | ||| |||| | | | ||||| | ||| || ||||||| |
Sbjct 1639 AAAACGAGTCAGAAATATCGCTCCCTTCAAAC-AAAAACGACAAT--CCTTTGCCTCCAA 1695
Query 1466 AAGCACCTGAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCC 1525
||||||||||||| | |||||||||||| || |||||||| ||||||||||| ||||| |
Sbjct 1696 AAGCACCTGAGGTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTTATAC 1755
Query 1526 CAGCAAATGAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAAT 1585
|||||||||||||||||||||| ||||| ||||| ||||| || || ||||| ||||| |
Sbjct 1756 CAGCAAATGAGATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAAAGATT 1815
Query 1586 CACTTCAAGAGCTTGTCATGCTTCCTCTTCGTAGGCCTGA-C-CTGTTCAAAGGTGGTCT 1643
|||||||||| ||||| |||||||| ||||| || || || | || ||| |||| |||||
Sbjct 1816 CACTTCAAGAACTTGTTATGCTTCCACTTCGAAGACCGGATCTCT-TTC-AAGGCGGTCT 1873
Query 1644 TCT-AAAGCCCTGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGAAAAACTATGA 1702
||| ||| || || ||||||||||| | || || |||||||||||||| ||||| |||
Sbjct 1874 TCTCAAA-CCATGTAGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACAATGC 1932
Query 1703 TGGCAAAAGCCATTGCGAACGAAGCTGGGGCTAGTTTCATAAATGTGTCGATGTCCACAA 1762
| |||||||| || || || |||||||| ||||||||||| ||||| || ||||| ||||
Sbjct 1933 TTGCAAAAGCAATCGCAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTCTACAA 1992
Query 1763 TCACTTCAAAATGGTTTGGAGAAGATGAGAAGAACGTGAGAGCTTTGTTCACCCTCGCGG 1822
||||||| ||||||||||||||||| ||||| |||||||||||| |||| || | || |
Sbjct 1993 TCACTTCGAAATGGTTTGGAGAAGACGAGAAAAACGTGAGAGCTCTGTTTACTTTAGCAG 2052
Query 1823 CCAAAGTGTCTCCAACTATTATATTTGTGGATGAAGTGGATAGTATGCTGGGACAGAGGA 1882
| ||||| |||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||
Sbjct 2053 CTAAAGTATCTCCAACGATTATATTCGTGGATGAAGTTGATAGTATGTTGGGACAAAGGA 2112
Query 1883 CAAGAGTTGGCGAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACACTGGG 1942
|||||||||| || ||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct 2113 CAAGAGTTGGAGAACATGAAGCTATGAGGAAAATTAAGAATGAGTTTATGACGCATTGGG 2172
Query 1943 ATGGGCTTATGTC-AAATGCGGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGACCA 2001
||||||| ||| | ||| | ||||| | ||||||||||||||||| |||||||||||
Sbjct 2173 ATGGGCTAATGACGAAA-CCCGGTGAAAGGATTCTCGTTCTTGCAGCGACAAACAGACCG 2231
Query 2002 TTTGATCTCGATGAAGCTATCATCAGGAGGTTTGAGCGAAGAATCATGGTGGGTCTTCCA 2061
|||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 2232 TTTGATCTTGATGAAGCTATCATTAGGAGGTTTGAGCGAAGAATAATGGTGGGACTTCCT 2291
Query 2062 TCGGTCGAGAGCAGAGAGAAGATCTTGAGAACCTTATTGTCAAAAGAGAAAACAGAGAAT 2121
||| | |||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 2292 TCGATTGAGAGCAGAGAGAAGATCTTGAGAACTTTGTTGTTGAAAGAGAAAACAGAGAAT 2351
Query 2122 CTTGATTTCCAAGAGCTTGCG-CAGATGACAGATGGCTATAGTGGAAGTGATCTCAAGAA 2180
||||||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||||
Sbjct 2352 CTTGATTTCCATGAGCTTG-GACAGATGACAGAAGGCTACAGTGGAAGTGATCTCAAGAA 2410
Query 2181 CTTTTGCA-CAACAGCAGCATATCGACCAGTGAGGGAGCTGATAAAGCaagagtgcttga 2239
||| |||| || |||| || ||| |||| || || |||||||| |||| || | ||||
Sbjct 2411 CTTATGCATCA-CAGCTGCGTATAGACCGGTTAGAGAGCTGATTCAGCAGGAAAGATTGA 2469
Query 2240 aagaccaggagaggaggaagagagaggaagcagagaagaatagtga-agaaggatctgaa 2298
|||| |||||||||| ||||||||| ||||||| ||| || | | ||||| | | ||
Sbjct 2470 AAGATCAGGAGAGGAAGAAGAGAGAAGAAGCAG-GAA-AAG-GC-ACAGAAGAACCAAAA 2525
Query 2299 gcaaaagaagaagta-----t-ctgaagagagagGCATAACGTTGAGACCTTTGAGCATG 2352
| ||||||||||| | | |||| ||||||| || || ||||||||||||| ||||
Sbjct 2526 GAAAAAGAAGAAGCAGAAGCTTCTGAGGAGAGAGTTATTACATTGAGACCTTTGAACATG 2585
Query 2353 GAAGACATGA-AAGTAGCTAAAAGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGG 2411
|||||||||| || |||||||| |||||| ||||| ||||||||| |||||||||||||
Sbjct 2586 GAAGACATGAGAAA-AGCTAAAAACCAGGTAGCTGCGAGTTTTGCATCAGAAGGAGCAGG 2644
Query 2412 AATGAACGAACTCAAGCAGTGGAATGATTTGTATGGAGAAGGAGGCTCCAGGAAAAAGGA 2471
|||||| || || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2645 AATGAATGAGCTGAAGCAATGGAATGATTTGTATGGAGAAGGAGGCTCAAGGAAAAAGGA 2704
Query 2472 ACAGCTCTCTTACTTCCT 2489
||||||| ||||||||||
Sbjct 2705 ACAGCTCACTTACTTCCT 2722
> Ahg491983 jgi|Araly1|491983|fgenesh2_kg.7__1416__AT4G28000.1
Length=2181
Score = 1685 bits (912), Expect = 0.0
Identities = 984/1020 (96%), Gaps = 0/1020 (0%)
Strand=Plus/Plus
Query 1474 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1221
Query 1534 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCACTTCAA 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1222 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCGCTTCAA 1281
Query 1594 GAGCTTGTCATGCTTCCTCTTCGTAGGCCTGACCTGTTCAAAGGTGGTCTTCTAAAGCCC 1653
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1282 GAGCTTGTCATGCTTCCTCTACGTAGGCCTGACCTGTTCAAAGGTGGCCTTCTAAAGCCC 1341
Query 1654 TGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGAAAAACTATGATGGCAAAAGCC 1713
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1342 TGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGGAAAACTATGATGGCAAAAGCC 1401
Query 1714 ATTGCGAACGAAGCTGGGGCTAGTTTCATAAATGTGTCGATGTCCACAATCACTTCAAAA 1773
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1402 ATTGCGAACGAAGCTGGAGCTAGTTTTATAAACGTGTCAATGTCCACAATCACTTCAAAA 1461
Query 1774 TGGTTTGGAGAAGATGAGAAGAACGTGAGAGCTTTGTTCACCCTCGCGGCCAAAGTGTCT 1833
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1462 TGGTTTGGAGAAGACGAGAAGAACGTGAGAGCTTTGTTCACCCTTGCGGCCAAAGTGTCT 1521
Query 1834 CCAACTATTATATTTGTGGATGAAGTGGATAGTATGCTGGGACAGAGGACAAGAGTTGGC 1893
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1522 CCGACTATTATATTTGTGGATGAAGTGGATAGCATGCTGGGACAGAGGACAAGAGTCGGA 1581
Query 1894 GAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACACTGGGATGGGCTTATG 1953
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1582 GAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACATTGGGATGGGCTTATG 1641
Query 1954 TCAAATGCGGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGACCATTTGATCTCGAT 2013
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1642 TCGAATGCTGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGGCCTTTTGATCTCGAT 1701
Query 2014 GAAGCTATCATCAGGAGGTTTGAGCGAAGAATCATGGTGGGTCTTCCATCGGTCGAGAGC 2073
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1702 GAAGCCATCATCAGGAGGTTTGAGAGAAGAATCATGGTGGGTCTTCCATCGGTCGAGAGC 1761
Query 2074 AGAGAGAAGATCTTGAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTCCAA 2133
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 AGAGAGAAGATCTTAAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTCCAT 1821
Query 2134 GAGCTTGCGCAGATGACAGATGGCTATAGTGGAAGTGATCTCAAGAACTTTTGCACAACA 2193
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1822 GAGCTTGCGCAGATGACAGATGGTTATAGTGGAAGTGATCTCAAGAACTTTTGCACAACA 1881
Query 2194 GCAGCATATCGACCAGTGAGGGAGCTGATAAAGCaagagtgcttgaaagaccaggagagg 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 GCAGCATATCGACCAGTGAGGGAGCTGATAAAGCAAGAGTGCTTGAAAGACCAGGAGAGG 1941
Query 2254 aggaagagagaggaagcagagaagaatagtgaagaaggatctgaagcaaaagaagaagta 2313
| ||||| |||||||||| |||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 1942 AAGAAGAAAGAGGAAGCAAAGAAGAGTAGTGAAGAGGGATCTGAAACAAAAGAAGAAGTA 2001
Query 2314 tctgaagagagagGCATAACGTTGAGACCTTTGAGCATGGAAGACATGAAAGTAGCTAAA 2373
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 CCTGCGGAGAGAGACATAACGTTGAGACCTTTGAGCATGGAAGACATGAAAGTAGCTAAA 2061
Query 2374 AGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACTCAAGCAGTGG 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 AGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACTCAAGCAGTGG 2121
Query 2434 AATGATTTGTATGGAGAAGGAGGCTCCAGGAAAAAGGAACAGCTCTCTTACTTCCTTTAA 2493
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2122 AATGATTTGTATGGAGAAGGAGGCTCCAGGAAGAAGGAACAGCTTTCTTACTTCCTTTAA 2181
Score = 1325 bits (717), Expect = 0.0
Identities = 767/791 (97%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 557 GGACCTTGCGTAGGCACACAAGTGGCAACGATCTTCATTCAAGGGGCTTTGACGTTACAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGACCTTGCGTAGGCACACAAGTGGCAACGATCTTCATTCAAGGGGCTTTGACGTTACAA 433
Query 617 GTCAGCCTCCACGACTCAAGCGGAATGCTTCTGCTGCTTCTGATATGAGTAGCATATCAT 676
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTCATCCTCCGCGACTCAAGCGGAATGCTTCTGCTGCTTCTGATATGAGTAGCATATCAT 493
Query 677 CCCGTTCTGCAACTTCTGTTTCAGCTTCAAGCAAACGCAGTGCTAACTTGTGCTTTGATG 736
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 494 CCCGTTCCGCAACTTCTGTTTCAGCTTCAAGCAAACGCAGTGCAAACTTATGCTTTGATG 553
Query 737 AGAGACTTTTCCTTCAGTCACTTTACAAGGTCTTGGTTTCGATTTCAGAAACCAATCCTA 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AGAGACTTTTCCTTCAGTCACTTTACAAGGTCTTGGTTTCGATTTCAGAAACCAATCCTA 613
Query 797 TAATAATATACCTGAGGGATGTTGAGAAGCTTTGTCAGTCAGAAAGGTTCTACAAGTTGT 856
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TAATCATATACCTGAGGGACGTTGAGAAGCTTTGTCAGTCAGAAAGGTTCTACAAGTTGT 673
Query 857 TCCAGAGGCTCTTGACGAAGCTTTCTGGCCCTGTTTTGGTTCTCGGCTCAAGACTATTGG 916
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 674 TCCAGAGGCTCTTGACTAAGCTTTCTGGCCCTGTTTTGGTTCTTGGCTCAAGACTATTGG 733
Query 917 AACCCGAAGATGACTGTCAAGAAGTAGGAGAGGGCATTTCTGCTTTGTTTCCTTACAACA 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AACCCGAAGATGACTGTCAAGAAGTAGGAGAGGGCATTTCTGCTTTGTTTCCTTACAACA 793
Query 977 TCGAGATCAGACCGCCAGAGGATGAAAATCAACTCATGAGCTGGAAAACGA-GATTTGAA 1035
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 794 TCGAGATCAGACCGCCAGAGGATGAAAATCAACTCATGAGCTGGAAAAC-ACGATTTGAA 852
Query 1036 GATGACATGAAAGTGATACAGTTTCAAGACAACAAGAACCACATAGCCGAGGTTCTAGCG 1095
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 853 GATGACATGAAAGTGATACAGTTTCAGGACAACAAGAACCATATAGCAGAGGTTCTTGCG 912
Query 1096 GCTAATGATCTTGAGTGTGATGACTTAGGTTCCATATGCCATGCAGATACAATGTTCCTA 1155
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GCTAATGATCTTGAATGTGATGACTTAGGTTCCATATGCCATGCAGATACAATGTTCCTA 972
Query 1156 AGCAGTCACATTGAGGAAATTGTTGTTTCTGCAATCTCCTACCATCTGATGAACAACAAA 1215
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 973 AGCAGTCACATTGAGGAAATTGTGGTTTCTGCAATCTCCTACCATCTGATGCACAACAAA 1032
Query 1216 GAACCCGAATACAAAAACGGGAGGCTTGTAATATCTTCTAATAGCTTGTCCCATGGACTG 1275
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1033 GAACCCGAATACAAAAACGGGAGGCTTGTAATATCTTCCACTAGCTTGTCCCATGGACTG 1092
Query 1276 AATATATTACAGGAAGGTCAA-GGATGCTTTGAGGACTCCTTGAAGCTGGACACAAACAT 1334
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGTATATTACAGGAAGGT-AACGGATGCTTTGAGGACTCCTTGAAGCTGGACACAAACAT 1151
Query 1335 CGACTCCAAGG 1345
||||||||||
Sbjct 1152 TGACTCCAAGG 1162
Score = 569 bits (308), Expect = 3e-161
Identities = 328/338 (97%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAGAAGAGCGTGTTGTTTTCCGCGTTAGGGGTTGGTGTTGGGTTAGGGATTGGT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1 ATGGAGCAGAAGAGCGTGTTGTTTTCCGCGTTAGGGGTTGGTGTTGGTTTAGGCATCGGT 60
Query 61 CTAGCGTCGGGTCAGAGTTTGGGTAAATGGGCAAACGGGTCTATTTCTGCGGAGGATGGA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGCTTCGGGTCAGAGTTTGGGTAAATGGGCAAACGGGTCTATTTCTGCGGAGGATGGA 120
Query 121 CTAACCGGAGAAAAGATTGAGCAAGAGTTGGTTAGGCAGATCGTTGATGGCAGAGAGAGT 180
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTACCGGAGAGAAGATTGAGCAAGAGTTGGTTAGGCAGATTGTTGATGGCAGAGAGAGT 180
Query 181 AGTGTCACTTTCGACGAGTTTCCTTATTACCTAAGTGAGAAAACTCGGCTTTTATTGACA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGTCACTTTCGACGAGTTTCCTTATTACCTAAGTGAGAAAACTCGGCTTTTATTGACG 240
Query 241 AGTGCAGCTTATGTTCACCTAAAGCAATCTGATATCTCGAAGCACACGCGTAATCTTGCA 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 AGTGCAGCTTATGTTCACCTAAAGCAATTTGATATCTCGAAGCACACGCGTAATCTTGCA 300
Query 301 CCTGGAAGTAAGGCCATTCTTCTGTCTGGACCTGCTGA 338
|| |||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGGAAGTAAGGCCATTCTTCTGTCTGGACCTGCTGA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5