BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28010.1
Length=2912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945237 jgi|Araly1|945237|scaffold_701466.1 3236 0.0
> Ahg945237 jgi|Araly1|945237|scaffold_701466.1
Length=2169
Score = 3236 bits (1752), Expect = 0.0
Identities = 2023/2157 (94%), Gaps = 5/2157 (0%)
Strand=Plus/Plus
Query 12 ATC-TCCGATATGAGATTTTG-GACATCGGCGGCCGCCGCTGAGATTCTCCGACGTGATG 69
||| |||||||||||| |||| ||||||| | || |||| ||||||| ||||||||||||
Sbjct 15 ATCTTCCGATATGAGA-TTTGTGACATCGTCTGCGGCCGGTGAGATTTTCCGACGTGATG 73
Query 70 AGCACGTAGTGAGAAAGCTCTTGAACCCTCGTGTGTACTCCAAACTCGTTAATGCATTCT 129
||| ||||||||| |||||||| || ||| ||| ||| ||||| |||||| | ||||
Sbjct 74 AGCTTGTAGTGAGACGGCTCTTGAGCCAACGTCTGTGCTCTAAACTTGTTAATACCTTCT 133
Query 130 CTGAAACTGAAACCAAATTGAGATCGCTATGTGAGGATTCAAATCCTCAGCTCAAGAATG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTGAAACTGAAACCAAATTGAGATCGCTATGTGAGGATTCAAATCCTCAGCTCAAGAATG 193
Query 190 CGGTTTCAGTTTTCCAACAAGCAGTCGACTCCGGTAGCTCTCTTGCTTTCGCCGGAAATA 249
| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 194 CCGTTTCAGTTTTCCAGCAAGCAGTCGACTCCGGTGGCTCTCTTTCTTTCGCCGGAAATA 253
Query 250 ATCTCATGGCAAAGCTGGTACGCTCTAGAAACCACGAACTAGCATTTTCATTTTACCGCA 309
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 254 ATCTCATGGCAACGCTGGTACGCTCTAGAAACCACGAAGTAGCATTTTCATTTTACCGCA 313
Query 310 AGATGCTTGAGACTGATACTTTCATCAATTTCGTGTCGCTGAGTGGGTTGCTTGAATGTT 369
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 314 AGATGCTTGAGACTGATACATTCATCAATTTCGTGTCGCTGAGTGGGTTACTTGAATGTT 373
Query 370 ATGTGCAAATGCGTAAGACCGGGTTTGCGTTCGGGGTTCTCGCGTTGATGTTGAAGCGTG 429
|||||||||||||||||| || ||||| |||||||||||| |||||||| |||||||
Sbjct 374 TTGTGCAAATGCGTAAGACTGGTTTTGCACACGGGGTTCTCGCATTGATGTTAAAGCGTG 433
Query 430 GGTTTGCTTTCAATGTGTACAATCACAATATCCTCTTAAAGGGTTTATGTAGGAATCTGG 489
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 434 GGTTTGCTTTCAATGTGTATAATTATAATATCCTCTTAAAGGGTTTATGTAGGAATCTGG 493
Query 490 AATGTGGTAAAGCTGTTAGTTTACTGAGAGAAATGAGACGAAATTCTTTGATGCCTGATG 549
||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 494 AATTTGGTAAAGCTGTTAGTTTACTGAGAGAAATGAGACAAAACTCTCTGATGCCTGATG 553
Query 550 TTTTTAGCTACAACACGGTTATTAGAGGCTTCTGCGAGGGAAAAGAGTTAGAGAAAGCAT 609
|| |||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||
Sbjct 554 TTGTTAGCTACAACACGGTTATTCGAGGTTTCTGCGAGGGAAAAGAGCTGGAGAAAGCAT 613
Query 610 TGGAATTAGCTAATGAAATGAAAGGTAGTGGCTGTTCCTGGAGTTTGGTGACTTGGGGGA 669
|| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 614 TGCAATTAGCTAATGAAATGCAAGGCAGTGGCTGTTCTTGGAGTTTGGTGACTTGGGGGA 673
Query 670 TTCTGATAGATGCCTTTTGCAAGGCTGGTAAGATGGATGAGGCGATGGGCTTTCTTAAAG 729
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 674 TTCTGATAGATGCCTTTTGCAAGGCTGGTAAGATGGATGAGGCGATGGGCTTGCTCAAAG 733
Query 730 AAATGAAATTTATGGGTTTAGAGGCAGATCTTGTTGTGTATACTTCTCTGATTCGAGGGT 789
|||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 734 AAATGAAACATAAGGGTTTAGAGGCAGATCTTATTGTGTATACTTCTCTGATTCGAGGGT 793
Query 790 TTTGTGATTGTGGTGAGTTAGATAGAGGGAAGGCGCTCTTTGATGAGGTTCTGGAAAGAG 849
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 794 TCTGTGATTGTGGTGAGTTAGATAGAGGGAAGGCGCTATTCGATGAGGTTCTGGAAAGAG 853
Query 850 GAGATTCTCCCTGTGCGATTACATATAACACTCTAATTCGAGGTTTTTGCAAGTTAGGAC 909
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 854 GAGATTCTCCCTGTGCAATTACATATAACACGCTTATTCGAGGTTTTTGCAAGTTAGGAC 913
Query 910 AGTTGAAAGAAGCCTCAGAGATATTTGAGTTTATGATAGAGCGTGGAGTTCGTCCAAATG 969
||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 914 GGTTGAAAGAAGCCTCAGAGATTTTTGAGTTTATGATGGAGCGTGGAGTTCGCCCAAATG 973
Query 970 TTTACACGTACACGGGTCTAATCGATGGCCTTTGCGGAGTAGGTAAGACTAAGGAAGCCC 1029
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 974 TTTACACGTACACGGGTCTAATTGATGGCCTTTGCGGTGTAGGTAAGACTAAGGAAGCCC 1033
Query 1030 TGCAACTTTTGAATCTGATGATAGAGAAGGATGAAGAACCGAATGCTGTGACTTATAACA 1089
|||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||
Sbjct 1034 TGCAACTTTTAAATCTGATGTTAGAGAAGGATGAAGAACCAAATGTTGTGACATATAACA 1093
Query 1090 TTATTATTAACAAGCTGTGCAAGGATGGCCTTGTGGCGGATGCTGTAGAAATTGTTGAGT 1149
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||
Sbjct 1094 TTATTATTAACAAGCTGTGCAAGGATAGCCTTGTAGCGGATGCTTTAGAAATTGTAGAGT 1153
Query 1150 TAATGAAGAAGAGGCGTACAAGACCTGATAACATAACATACAATATTTTACTGGGAGGAC 1209
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1154 TAATGAAGAAGAGGCGTACAAGACCTGATAACATAACATACAATAGTTTACTGGGAGGAC 1213
Query 1210 TCTGTGCCAAAGGTGACCTAGACGAAGCAAGTAAGCTTCTCTATTTGATGCTGAAAGATA 1269
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1214 TCTGTGCCAAAGGTGACCTAGACGAAGCAAGTAAGCTTCTCTATTTAATGCTGAAAGATA 1273
Query 1270 GTAGTTATACGGATCCAGATGTTATATCATATAATGCGTTAATCCACGGGCTGTGCAAGG 1329
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1274 GTAGTTATACGGATCCAGATGTTATATCATTTAATGCGCTAATCCACGGGTTGTGCAAGG 1333
Query 1330 AAAACCGTCTTCATCAAGCTTTAGATATTTATGATTTGCTGGTTGAGAAATTGGGTGCTG 1389
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1334 GAAACCGTCTCCATCAAGCTTTAGATATTTATGATTTGCTGGTCGAGAAATTGGGTGCTG 1393
Query 1390 GAGATAGAGTAACCACTAATATATTGCTTAATAGCACTCTCAAGGCTGGAGATGTAAATA 1449
| |||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1394 GGGATATAGTTACCACTAATATATTGCTTAACAGCACTCTCAAGTCTGGAGATGTAAATA 1453
Query 1450 AGGCAATGGAACTTTGGAAACAAATATCTGATTCCAAAATTGTTCGAAATTCAGATACCT 1509
||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
Sbjct 1454 AGGCAATGGAACTTTGGAAACAAATATCTAATTCCAAAATTGTTCCAAACTCAGATACAT 1513
Query 1510 ATACCGCTATGATTGATGGGTTTTGCAAAACTGGCATGCTTAATGTTGCTAAAGGATTGC 1569
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 ATACTACTATGATTGATGGGTTTTGCAAAACTGGCATGCTTAATGTTGCTAAAGGATTGC 1573
Query 1570 TTTGCAAAATGAGAGTGTCTGAGCTACAGCCTAGTGTTTTTGACTACAACTGTCTATTGT 1629
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 1574 TTTGCAAAATGAGACTGTCTGAGCTACAGCCTAGTGTTTTCGACTACAACTGCCTACTGT 1633
Query 1630 CATCTTTATGCAAAGAGGGAAGCTTGGACCAGGCATGGAGATTATTTGAGGAAATGCAGC 1689
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1634 CATCATTATGCAAAGAGGGAACCTTAGACCAGGCATGGAGATTATTTGAGGAAATGCAGC 1693
Query 1690 GTGATAACAATTTTCCCGACGTTG-TTTCTTTCAATATTATGATTGATGGAAGTCTTAAA 1748
||||| ||| |||||| |||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1694 GTGATGACAGTTTTCCAGACG-TGATTTCTTTCAATATCATGATTGATGGAAGTCTTAAA 1752
Query 1749 GCAGGGGATATTAAGTCTGCAGAGTCACTTCTTGTTGGGATGTCTCGTGCTGGTCTTTCC 1808
||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||
Sbjct 1753 GCAGGGGATATTAAGTCTGCAGAATCACTTCTTGCGGGGATGTCTCATGCTGGTCTTTCC 1812
Query 1809 CCTGATTTATTTACTTATTCGAAGTTGATAAATAGGTTCCTGAAACTTGGATATTTAGAC 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 CCTGATTTATTTACTTATTCGAAGTTGATAAATAGGTTCCTGAAACTTGGATATTTAGAC 1872
Query 1869 GAGGCTATCAGTTTCTTTGACAAAATGGTTGATAGCGGCTTTGAACCGGATGCTCATATT 1928
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1873 GAGGCTATCAGTTTCTTTGACAAAATGATTGATAGCGGTTTTGAACCTGATGCTCATATT 1932
Query 1929 TGTGATTCTGTGTTGAAGTATTGTATTTCACAGGGAGAAACAGACAAGTTGACTGAACTT 1988
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1933 TGCGATTCTGTATTGAAGTATTGTATTTCACAGGGAGAAACAGACAAATTGACGGAATTT 1992
Query 1989 GTaaaaaaaCTGGTGGATAAAGATATTGTCCTGGACAAAGAACTTACGTGTACGGTCATG 2048
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1993 GTAAAAAAACTGGTGGATAAAGATGTTGTCCTTGACAAAGAACTTACGTGTACGGTCATG 2052
Query 2049 GATTACATGTGTAACAGCTCAGCAAACATGGATCTTGCAAAGCGGTTGCTAAGAGTGACA 2108
||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||
Sbjct 2053 GATTACATGTGTAGCAGCTCAGGAAACATGGATATTGCAAAACGGTTGCTAAGAGTGGCA 2112
Query 2109 GATGATAAAGAAGAAAGGGATAAGTAGGGTGCATAGGCATGCTCACTTATGCTAACT 2165
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 2113 GATGATAAAGAAGAAGGGGATAAGTGGGGTGCATAGTCATGCTCACTTATGCTAACT 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109928447070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5