BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28020.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491981 jgi|Araly1|491981|fgenesh2_kg.7__1414__AT4G28020.1 1766 0.0
> Ahg491981 jgi|Araly1|491981|fgenesh2_kg.7__1414__AT4G28020.1
Length=1111
Score = 1766 bits (956), Expect = 0.0
Identities = 1062/1113 (95%), Gaps = 8/1113 (1%)
Strand=Plus/Plus
Query 16 TCCCGCCGCCGTCGCAACGTTCCACTCGCCGTCGCAGCAAACAG-T---TCATCTATGGC 71
||||||||||||||||||||||||||||||| | |||||||||| | ||||| |||||
Sbjct 1 TCCCGCCGCCGTCGCAACGTTCCACTCGCCGGCACAGCAAACAGCTCGCTCATCCATGGC 60
Query 72 TACAT-CAGGACGCTCCCACGGCTCTACCACGGCGGCTTTAGCCTTTACACTCGCCGTAG 130
|| | ||||| ||||| |||||| |||||| |||||||||||||| |||||||||||||
Sbjct 61 TA-TTGCAGGAAGCTCCAACGGCTATACCACAGCGGCTTTAGCCTTGACACTCGCCGTAG 119
Query 131 TATCTGTATCCGCTGCCTTCTCGCTGTATAGATGGCGAAGACGAGAAGAAGATTTGGAGA 190
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TATCTGTATCCGCTGCCGTCTCGCTGTATAGATGGCGAAGACGAGGAGAAGATTTGGAGT 179
Query 191 ATAGGATCAAGGAATTTGAGAAGTCTTTGGGATCTACCTTGGAAAAAAGTGCTTCTGAGA 250
||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 180 ATAGGATTAAGGAACTTGAGAAGTCTTTGGGATCTACCATGGAGAAAAGTGCTTCTGAGA 239
Query 251 GAAAAGGTCGAGTCAAAGCTCAGCAGGCTTTACGGGAGGCGTTAGCACAGACTGAGTCAC 310
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAAAGGTCGAGTTAAAGCTCAGCAGGCTTTACGGGAGGCGTTAGCACAGACTGAGTCAC 299
Query 311 ATGATTTACACAGCACAATATACCCGATGCGACCTATTGGCACTATCCAGTCTTGCTTCT 370
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 300 ATGATTTACACAGCACAATATACCCGATGCGACCAATTGGCACTATACAGTCTTGCTTCT 359
Query 371 CTACTAGGAACGGGACACCGAGGCAGCCATTGCTTGTTTCTCTTGCGAGGGCATGTTTGA 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTACTAGGAACGGGACACCGAGGCAGCCATTGCTTGTTTCTCTTGCGAGGGCATGTTTGG 419
Query 431 TCTTTGATCCGGCTTTGGTTCCTCCTGCGTCTCTTGAGGGTCTTGAAGAGTATTCTCATT 490
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 TCTTTGATCCGGCTTTGGTTCCTCCTGCGTCTCTTGAGGGTCTCGAAGAGTATTCTCATT 479
Query 491 GCTGGATACTCTATGTGTTTCATCTCAATACTGATATCGAGAAGCTATGGAGAAAACCAT 550
|||||||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 480 GCTGGATACTATACGTGTTTCATCTCAACACTGATATAGAGAAGCTATGGAGAAACCCAT 539
Query 551 CTCAGTCGAAGCTCAAGGCAAAGGTGAGAGTGCCACGGCTAAATGGGGAACGGAAGGGAG 610
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 540 CTCAGTCGAAGCTCAAGGCAAAGGTGAGAGTGCCAAGGCTAAATGGGGAAAGGAAGGGAG 599
Query 611 TCTTTGCTACGCGGTCCCCTCATCGACCTTGTCCCATTGGCCTCACCGTTGCTAAGGTGG 670
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TCTTTGCTACTCGGTCCCCTCATCGACCTTGTCCCATTGGCCTCACTGTTGCTAAGGTGG 659
Query 671 AGGAAATCCAAAAGGATAAGGTTCTCCTCTCTGGTGTCGATCTGGTGGATGGGACTCCGG 730
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 660 AGGAAATCCAAAAGGATAAGGTTCTGCTCTCTGGTGTTGATCTGGTGGATGGGACTCCGG 719
Query 731 TGCTCGACATCAAACCATATTTACCATACTCGGACAGTATTCAAGGAGCCTCAGTGCCAA 790
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCTCGACATCAAACCTTATTTACCATACTCGGACAGTATTCAAGGAGCCTCAGTGCCAA 779
Query 791 ACTGGGTAAAGGAGGACTGCTCATTGGCTGTGGCTTCTGTGACTTTCTCAGATACCTTCT 850
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 780 ACTGGGTAAAGGAGGACTGCTTATTGGCTGTGGCTTCTGTGACATTCTCAGAGACCTTCT 839
Query 851 CTTCATCCATCACCAGCTGCTGGAAACTGATAGAAAAGAAGTCTCTATATAGTTCAGCAG 910
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTCCTCCATCACCAGCTGCTGGAAACTGATAGAAAAGAAGTCTCTATATAGTTCAGCAG 899
Query 911 ATGAGTTTAGGAGCTTGATCACGCAGGTCCTGTCATGGGACATACGATCAATGTCGCAAC 970
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGAGTTTAGGAGCTTGATCACGCAGGTCCTGTCATGGGACATACGATCAATGTCGCAAC 959
Query 971 GGAACAAGCCACAAGATACATTGGATG-AGGAAATTGTTTATCACTTGGTTCTGGAGGGA 1029
||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||
Sbjct 960 GGAACAAGCCACAAGATACATTGAATGCA-GAAATCGTTTATCACTTGGTTCTGGAGGGA 1018
Query 1030 CTAGACGTGTCTTACATGATAGATAATGAAAGTAATATTCTCGTTCAGGATGTTTCTCTT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTAGACGTGTCTTACATGATAGATAATGAAAGTAATATTCTCGTTCAGGATGTTTCTCTT 1078
Query 1090 CCCAAAAACCTGCAAGATGTTGCAGGAAGCTGA 1122
||||||||| |||||||| |||||||| |||||
Sbjct 1079 CCCAAAAACTTGCAAGATTTTGCAGGACGCTGA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5