BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28025.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491980 jgi|Araly1|491980|fgenesh2_kg.7__1413__AT4G28025.1 743 0.0
> Ahg491980 jgi|Araly1|491980|fgenesh2_kg.7__1413__AT4G28025.1
Length=634
Score = 743 bits (402), Expect = 0.0
Identities = 508/557 (91%), Gaps = 15/557 (3%)
Strand=Plus/Plus
Query 94 ATATAAAACAGAGACG-A-AA--AACG-TTGCGAAAATACGAAAGGCTTAGAAATGGTGG 148
|||||||||||||||| | || |||| || |||||||| ||||||||||||||||||||
Sbjct 1 ATATAAAACAGAGACGAAGAACGAACGCTT-CGAAAATATGAAAGGCTTAGAAATGGTGG 59
Query 149 TGACGTCTTTCTCTTCAGCGCCGCCTATCTTCTTCTTACC-TGGAGCTGATGCTCAGTTT 207
||||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||| ||
Sbjct 60 TGACGTCTTTCTCTTCACCGCCGTCTATCTTCTTCTT-CCATGGAGCTGATCCTCAGCTT 118
Query 208 TCTTCTTCCAATGGAAGGTTTGCTATTCCTTCCTCTTCTCTCGTAAAGGGACTAAGAAGA 267
|||| |||||||| | ||||| | |||||||||| |||||||||||||||||||||||
Sbjct 119 ACTTCAACCAATGGACGCTTTGCGACTCCTTCCTCTCCTCTCGTAAAGGGACTAAGAAGA 178
Query 268 CACCAAGATGCAAAGTTGGTGGGCAACAGAGCCAGAGTTGGAGTAGTACGAGTCCTAGCG 327
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 179 CACCAAGATGCAAAGTTGGTGGGAAACAGAGCCAGAGTTGGAGTAGTTCGAGTCCTAGCA 238
Query 328 AACCCAAATGTATCTCCTCCTCCTCCTCCAGGAAAAGCAAAGGTaaaaaaaGAGGTAATC 387
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACCCAAATGTA--T-CTCCTCCTCCTCCAGGAAAAGCAAAGGTAAAAAAAGAGGTAATC 295
Query 388 ATGGTAGACCCTCTTGAGGCTAAGCGGTTAGCTAGTAAGCAAATGGAAGAGATTAAAGGC 447
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 296 ATGGTAGACCCTCTTGAGGCCAAGCGGTTAGCTGGCAAGCAAATGGAAGAGATTAAAGGC 355
Query 448 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATTAACGGAGCATGGGCAATCATA 507
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATAAACGGAGCATGGGCAATCATA 415
Query 508 GGACTCATGATAGGGCTGGTGATCGAAGCTCAAACGGGGAAGGGTATTCTGGCTCAGTTG 567
||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 416 GGACTCACGATAGGGCTGGTGATCGAAGCCCAAACAGGGAAGGGTATCCTGGCTCAGTTG 475
Query 568 GCTGGTTATTGGTCTGCAGTTGTCCATTTGTTCACTCCATCAACTTAGAATGAA----TT 623
||||||||||||||||| ||| | ||| | || ||||||||| ||||||||| ||
Sbjct 476 GCTGGTTATTGGTCTGCGGTTTTGCATCTATTTGTTCCATCAACATAGAATGAAAAACTT 535
Query 624 AAGTTTCATTTGGTTTT 640
||||||||||||||||
Sbjct 536 GAGTTTCATTTGGTTTT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5