BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28030.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328890 jgi|Araly1|328890|fgenesh1_pm.C_scaffold_7001117 1310 0.0
Ahg905615 jgi|Araly1|905615|Al_scaffold_0003_2743 486 1e-136
Ahg889885 jgi|Araly1|889885|Al_scaffold_0007_1871 486 1e-136
Ahg894531 jgi|Araly1|894531|Al_scaffold_0006_2527 481 5e-135
Ahg923063 jgi|Araly1|923063|scaffold_104344.1 231 5e-60
> Ahg328890 jgi|Araly1|328890|fgenesh1_pm.C_scaffold_7001117
Length=828
Score = 1310 bits (709), Expect = 0.0
Identities = 790/829 (95%), Gaps = 5/829 (1%)
Strand=Plus/Plus
Query 14 ATGGCGTTTCTCTGTTCGTCTCTCCCAAGTTCATCCTCTATCGCCATTTTCGGCGACCCA 73
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1 ATGGCGTTTCTCTGTTCGTCTCTTCCAAGTTCATCCTCTATCGCCATTTTCAGCGAGTCA 60
Query 74 AACACAGATGGATCATCACGCTCGTA-TCTTTCGATTCCTTCATTGAAGTTACGGTTCCG 132
|||||||||||||||||||||||| | ||||||||||||||| |||| ||| ||||||||
Sbjct 61 AACACAGATGGATCATCACGCTCG-ACTCTTTCGATTCCTTCCTTGAGGTTCCGGTTCCG 119
Query 133 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGACAAGTCGACTTTCGTCAT 192
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 120 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGATAAGTCGACGTTCGTCAT 179
Query 193 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 239
Query 253 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 299
Query 313 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 359
Query 373 TTGCATAAATGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTTTGAGGATTTATGCTC 432
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CTGCATAAACGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTGTGAGGATTTATGCTC 419
Query 433 TGCATGTAAGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAA 492
| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 TTCATGCAAGTTTTCTGATGGCATAGAAGACAGAGTTGTGGTGGGGAGCCTCGATCTTAA 479
Query 493 CCAATGTCGTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 552
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCAATGTCGGTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 539
Query 553 TTTTGCTAGAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGT 612
||| || || |||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 540 TTTCGCAAGGGCATACTTAAGCAACGTTTGTGTTGCTAAAGAGCTGCATCGTAATGGAGT 599
Query 613 TGGTTACAAACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 672
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGTTACAAACTCATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 659
Query 673 GTACGTGCATGTGACGGTAGACAATGAAGCAGCGAAGAGTCTATACATGAAAAGTGGGTT 732
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 GTACGTGCATGTGACGGTAGACAATGAAGCTGCGAAGAGGCTATACATGAAAAGTGGGTT 719
Query 733 TGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCT 792
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 CGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAACAGGCCACAACGGCT 779
Query 793 CCTCCTCTGGCTCGCCCTTCCTAC--C-TCCCCAATCATGTCCATGTAA 838
|||||||||||| |||| ||||| | ||| |||| ||||||||||||
Sbjct 780 CCTCCTCTGGCTATCCCTCCCTACTACCTCCTCAATTATGTCCATGTAA 828
> Ahg905615 jgi|Araly1|905615|Al_scaffold_0003_2743
Length=411
Score = 486 bits (263), Expect = 1e-136
Identities = 337/370 (91%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91
Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151
Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 152 GAGCATACTTGAGCAACGTCTGTGTTGCTAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211
Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680
|||| ||||| ||||| |||||||| | || ||||||||||||||||||||
Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259
Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739
|||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | ||||||
Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318
Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799
||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 319 GAGACTGCTGAGC-AGCGTGGCAAGCTCGATACCTTAATAGACCACAACGGCTCCTCCTC 377
Query 800 TGGCTC-GCC 808
|||||| |||
Sbjct 378 TGGCTCCGCC 387
> Ahg889885 jgi|Araly1|889885|Al_scaffold_0007_1871
Length=411
Score = 486 bits (263), Expect = 1e-136
Identities = 337/370 (91%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91
Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151
Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GAGCATACTTAAGCAATGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211
Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680
|||| ||||| ||||| |||||||| | || ||||||||||||||||||||
Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259
Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739
|||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | ||||||
Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318
Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 319 GAGACTGCTGAGC-AGCGTGGCAAGCTCGATACCTCAATAGACCACAACGGCTCCTCCTC 377
Query 800 TGGCTC-GCC 808
|||||| |||
Sbjct 378 TGGCTCCGCC 387
> Ahg894531 jgi|Araly1|894531|Al_scaffold_0006_2527
Length=411
Score = 481 bits (260), Expect = 5e-135
Identities = 336/370 (91%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91
Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151
Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GAGCATACTTAAGCAATGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211
Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680
|||| ||||| ||||| |||||||| | || ||||||||||||||||||||
Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259
Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739
|||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | ||||||
Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318
Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799
||||| | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 319 GAGACTGTTGAGC-AGCGTGGCAAGCTCGATACCTCAATAGACCACAACGGCTCCTCCTC 377
Query 800 TGGCTC-GCC 808
|||||| |||
Sbjct 378 TGGCTCCGCC 387
> Ahg923063 jgi|Araly1|923063|scaffold_104344.1
Length=408
Score = 231 bits (125), Expect = 5e-60
Identities = 143/151 (95%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 660 GCATAACGGATATGTACGTGCATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATAC 718
|||||||||||||||||||||||||||| |||| |||||||||||| | |||| ||||||
Sbjct 111 GCATAACGGATATGTACGTGCATGTGACAGTAGCCAATGAAGCAGC-ACAGAGGCTATAC 169
Query 719 ATGAAAAGTGGGTTTGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAT 778
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ATGAAAAGTGGGTTCGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAC 229
Query 779 AGGCCACAACGGCTCCTCCTCTGGCTC-GCC 808
||||||||||||||||||||||||||| |||
Sbjct 230 AGGCCACAACGGCTCCTCCTCTGGCTCCGCC 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5