BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28040.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491976 jgi|Araly1|491976|fgenesh2_kg.7__1409__AT4G28040.4 2163 0.0
> Ahg491976 jgi|Araly1|491976|fgenesh2_kg.7__1409__AT4G28040.4
Length=1616
Score = 2163 bits (1171), Expect = 0.0
Identities = 1380/1477 (93%), Gaps = 29/1477 (2%)
Strand=Plus/Plus
Query 3 CCAACTTCGGCTTTCCAAGAACATGGTTGCATCGAGCATATCTTTGCT--AGAT--TTTA 58
||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||
Sbjct 14 CCAACTTTGGCTTTCCAAGAACATGGTTGCATCGAGC--AGCTTTGCTAGAGATAAAGTA 71
Query 59 -AATATAACTAC-A---ACTTCTTGCTTACTTTGTGATGCGGAAACTCAAAACCGTAATC 113
| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 72 TACTATAACTACTACGTACTTCTCCCTTACTTTGTGATGCGGAAACTCAAAACCGTAATC 131
Query 114 ACTCATGTTATA-TTTTTTGTTGTTGCTTTCAACGCTAATATCTGAAACC-----AGTTT 167
|||| ||||||| |||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 132 ACTCGTGTTATATTTTTTTGTTGTTTCTTTCAACGCGAATATCTGAAACCAGTTTAGTTT 191
Query 168 TCGCTGGTCTA-AGATCCATTTGCAAGAAATGTCAACAAAATAAAAAGCTCTTATCATTC 226
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 192 TCGCTGGTCTACAGATCCATTTGCAAGAAATGTCAACAAAATAAGAAGCTCTTATCATTC 251
Query 227 CCACGAGTTTTAGTTAA-G-A-T---CTTA-agagagagagagaga--gaTGGAGATATC 277
||||||||||||||||| | | | | | ||||||||||||||| ||||||||||||
Sbjct 252 CCACGAGTTTTAGTTAAGGTATTCAACAGAGAGAGAGAGAGAGAGAGCGATGGAGATATC 311
Query 278 GAAATACAAGGCGGTGCTAGCGTTAGTGATGTTGCAGTTTACGTCCGCCGGAGTTGCACT 337
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 312 TAAATACAAGGCGGTGCTAGCGTTAGTGATGCTGCAGTTTACGTCGGCCGGAGTTGCACT 371
Query 338 CTTCACGAAAGCTGCTTTCATGGAAGGTCTCAATCCCACCGTCTTCGTTGTTTACCGTCA 397
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 372 CTTCACGAAAGCTGCTTTCATGGAAGGACTCAATCCCACCGTCTTCGTTGTTTACCGTCA 431
Query 398 AGCCATCGCCACTCTCTTCATCTGCCCCATCTCTTTCATTTCCGCTTGGAGGAAAGAAAA 457
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 432 AGCCATCGCCACTCTCTTCATCTGCCCCATCTCTTTCATTTCCGCTCGGAGGAAAGAAAA 491
Query 458 CAAACCTTCTCTGGGAGTAAGAGGCTTTTGGTGGGTGGCTTTGACGGCTGTTATTGGTGT 517
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAAACCATCTCTGGGAGTAAGAGGCTTTTGGTGGGTGGCTTTGACGGCTGTTATTGGTGT 551
Query 518 GACTGTTAATCAGAACGCTTATTTCAAAGGGATTGACTTGTCTTCTTCATCCATGGCTTG 577
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GACTGTGAATCAGAACGCTTATTTCAAAGGGATTGACTTGTCTTCTTCATCCATGGCTTG 611
Query 578 TGCCATGACTAATCTTATTCCTGCCGTCACCTTCATTATCTCCATCATTGTTGGGTTCGA 637
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 612 TGCCATGACTAATCTTATTCCTGCCGTCACCTTTATTATCTCCATCATTGTTGGGTTCGA 671
Query 638 GAGTATAAAGAGGAGAAGTATGAAAAGTGTTGCAAAAGTAATAGGAACTGGTGTCTGTGT 697
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 672 GAGTATAAAGAGGAGAAGTATGAAAAGTGTTGCAAAGGTAATAGGAACAGGTGTCTGTGT 731
Query 698 GGGAGGAGCCATGGCAATGACTTTTCTCAGAGGTCCAAAATTGCTCAATGCCTTGCTCAA 757
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 732 GGGAGGAGCCATGGCTATGACTTTTCTCAGAGGTCCAAAATTGCTCCATGCGTTGCTCAA 791
Query 758 CCAAGACAACACAGCTTGGTTACTCGGCTGCTTCTTCCTTCTTATTAGCACATTTGCTTG 817
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 792 CCAAGACAACACAGCTTGGTTACTCGGCTGTTTCTTTCTTCTCATTAGCACATTCGCTTG 851
Query 818 GTCTCTTTGGTTGATCCTTCAGGTTCCTATTGCCTCTCACTGTCCTGACCACTTGTACAC 877
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 852 GTCCCTTTGGTTGATCCTTCAGGTTCCTATTGCATCTCACTGTCCTGATCACTTGTACAC 911
Query 878 TTCTGCCTGCACATGTTTCATCGCTACCATAGCTTCTTTCCTCGTGGCTCTCGCCTTAGG 937
||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 912 TTCTGCCTGCACATGTTTCATGGCTACCATAGCCTCTTTCTTCATGGCTCTCGCCTTAGG 971
Query 938 CAACACTCATTTACCGCCCTGGAAGCTTGATTCCTTCTTGAAGCTCTCTTGCTGCATATA 997
||||||||||||||| | ||||| |||||||||| |||||||||||| || ||||||||
Sbjct 972 AAACACTCATTTACCGTCATGGAAACTTGATTCCTCCTTGAAGCTCTCCTGTTGCATATA 1031
Query 998 CTCTGGATTCCAGTTGGCGATATCTTTCTTTCTACAAGCTTGGATCGTATCACAGAAAGG 1057
||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1032 CTCTGGATTTCAATTGGCGATATCTTTCTTTCTACAAGCTTGGGTCGTGTCACAGAAAGG 1091
Query 1058 ACCTGTTTTCTCTGCCCTCTTCAACCCTCTTTCTGCAGTCATCGTCACTTTCTTCGGCGC 1117
|||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1092 ACCTCTTTTCTCTGCCCTATTTAATCCTCTTTCTGCAGTCATCGTCACTTTCTTCGGCGC 1151
Query 1118 TCTGTATCTAAAAGAACAGACTTACCTCGGGAGCTTGTTAGGCGCTTTGGCTATCATCCT 1177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1152 TCTGTATCTAAAAGAACAGACTTACCTCGGGAGCTTGCTAGGCGCTTTGGCTATCATCCT 1211
Query 1178 TGGTCTCTACATTGTTCTCTGGGGCAAATCTGAAGACTATCAAGAAGAATCAACAGACCT 1237
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1212 TGGTCTCTATATTGTTCTCTGGGGCAAATCCGAAGACTATCAAGAAGAATCAACAGACCT 1271
Query 1238 GAAATTGGAAAATGAACACAACACTTCCTCTCAATCTGACATTGTTTCCATTATGATTGG 1297
|||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1272 GAAATTGGAAAATGAATACACCACTTCCTCCCAATCCGACATTGTTTCCATTATGATTGG 1331
Query 1298 TGATAAGGCCTTTCGTAGTTCGGAGCTATTAGAACCTCTTCTCATGTGAGTTTTATTGAA 1357
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1332 TGATAAGGCCTTTCGTAGTTCGGAGCTATTAGAACCGCTTCTCATGTGAGTTATATTGAA 1391
Query 1358 GTCAGTTCTACATGGTGTAAGTGGAAATTTTT-GACAATGGACACTTAAAGAATATGAAA 1416
|| ||||||| |||||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 1392 GTTAGTTCTAAATGGTGTAAG-GGAAATTTTTTGACAATGGACAATTTAAGAATATGAAA 1450
Query 1417 ATGATAATAACGCAAAGTGAAATGGAACTTCTTTTAC 1453
|||||| ||| ||||| ||||||||||||||||||||
Sbjct 1451 ATGATAGTAATGCAAATTGAAATGGAACTTCTTTTAC 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5