BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28050.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945231 jgi|Araly1|945231|scaffold_701460.1 1279 0.0
Ahg491976 jgi|Araly1|491976|fgenesh2_kg.7__1409__AT4G28040.4 219 5e-56
> Ahg945231 jgi|Araly1|945231|scaffold_701460.1
Length=843
Score = 1279 bits (692), Expect = 0.0
Identities = 794/842 (94%), Gaps = 11/842 (1%)
Strand=Plus/Plus
Query 85 TTTTTATTTCCGCCGGAACAAAAAGCGATGGTTCAGTGTAGCAACAATCTCCTCGGAATC 144
|||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||
Sbjct 8 TTTTTATTTCCGCCGG---AGAAA---ATGGTTCAGTGTAGCAACAACCTCCTCGGAATC 61
Query 145 CTCAATTTCTTCACATTCCTCCTCTCAATCCCAATTCTCTCCGCCGGGATCTGGCTCGGC 204
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTCAATTTCTTCACTTTCCTTCTCTCAATCCCAATTCTCTCCGCCGGGATCTGGCTCGGC 121
Query 205 AAAAATGCAGCAACCGAATGCGAACGTTTCCTCGACAAACCAATGGTCGTACTCGGAATC 264
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 122 AAAAATGCAGCTACCGAATGCGAACGTTTTCTCGACAAACCAATCGTCGTACTCGGAATC 181
Query 265 TTCCTCATGTTCGTCTCAATCGCCGGACTCGTCGGTGCTTGTTGCCGTGTCTCTTGCCTC 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTCCTCATGTTCGTCTCAATCGCCGGACTCGTCGGTGCTTGTTGCCGTGTCTCTTGCCTT 241
Query 325 CTCTGGCTTTACCTCTTCGCTATGTTCCTCCTCATTCTCCTCGGCTTCTGTTTCACAATC 384
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 242 CTCTGGCTTTACCTCTTCGCTATGTTCCTCCTCATTCTCCTCGGCTTCAGCTTCACAATC 301
Query 385 TTCGCTTTCGCAGTCACAAACCGCGGCGCCGGTGAGGTTATATCGGATCGAGGGTATAAA 444
||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 302 TTCGCATTCGCCGTCACTAACCGCGGCGCCGGCGAGGTTATATCAGATCGAGGGTATAAA 361
Query 445 GAGTATCATGTCGCCGATTACTCTAATTGGTTGCAGAAACGTGTCAACAATGCTAAGAAT 504
||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 362 GAGTATCATGTCGGCGATTACTCAAATTGGCTGCAGAAACGTGTCACCAATGCTAAGAAT 421
Query 505 TGGGAACGGATCAGGAGTTGTTTGATGTACTCTGACGTTTGCTCCACTTATCGTACTCGT 564
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 422 TGGGAACGGATCAGGAGTTGTTTGATGTACTCGGACGTTTGCTCCACTTATCGCACTCGT 481
Query 565 TATGCCAGCATTAACGTTGAAGATTTCTACAAATCTAATCTTAATGCTCTTCAGTCTGGT 624
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 482 TATTCCAGCATTAACGTTGAAGAATTCTACAAGGCTAATCTTAATGCTCTTCAGTCTGGT 541
Query 625 TGTTGTAAGCCGTCCAATGACTGTAACTTCACCTATGTGAACCCGACTACTTGGACAAAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTTGTAAGCCGTCCAATGACTGTAACTTCACCTATGTGAACCCGACTACTTGGACAAAG 601
Query 685 ACTC-CTGGTCCATACAAAAACGAGGACTGTAATGTGTGGGACAACAAACCAGGAACTCT 743
|| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 602 AC-CACTGGTCCATACAAAAACGAGGACTGTAATGTCTGGGACAACAAACCAGGAACTCT 660
Query 744 CTGCTACGACTGTGAAGCCTGCAAGGCTGGTCTGCTTGACAACATCAAGAACTCATGGAA 803
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 661 CTGCTACGACTGCGATGCCTGCAAGGCTGGTCTACTCGACAACATCAAGAACTCATGGAA 720
Query 804 AAAGGTGGCTAAGGTCAACATTGTCTTCCTCATATTCCTCATTATCGTCTACTCTGTTGG 863
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 AAAAGTGGCTCAGGTCAACATTGTTTTCCTCATATTCCTCATTATCGTCTACTCTGTTGG 780
Query 864 TTGTTGTGCGTTCAGGAACAACAGGAAACGCAGTTGGTAATAGAT-TCTAATGCGTT-GA 921
|||||| |||||||||||||||||||||||||| ||||| ||||| | || |||||| ||
Sbjct 781 TTGTTGCGCGTTCAGGAACAACAGGAAACGCAGCTGGTATTAGATCTTTA-TGCGTTTGA 839
Query 922 AA 923
||
Sbjct 840 AA 841
> Ahg491976 jgi|Araly1|491976|fgenesh2_kg.7__1409__AT4G28040.4
Length=1616
Score = 219 bits (118), Expect = 5e-56
Identities = 161/180 (89%), Gaps = 9/180 (5%)
Strand=Plus/Minus
Query 1037 ATTTCAATGTATTTTCTCTCTTAAATTTGCAAC-----A-T-AATGAGTTACAAAAGCAC 1089
||||||||||| ||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1616 ATTTCAATGTAATTTCTCTCTTAAATTTGCAACATATGACTAAATGAGTTACAAAAGCAC 1557
Query 1090 TTGCTTGTGCTTCTATTTCGACTCTTTTGTGTGTTGAGTAGCTTATACATCTGTTGAGAC 1149
|||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||
Sbjct 1556 TTGCTTGTGCTTCTATTTCGACTCTTGTGTGTG--GAGTGGCTTATACATCTATTGAGAT 1499
Query 1150 GAGTGAGATTTGTAAAAGAAGTTCCATTTCACTTTGCGTTATTATCATTTTCATATTCTT 1209
|| ||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 1498 GACTGAGATTCGTAAAAGAAGTTCCATTTCAATTTGCATTACTATCATTTTCATATTCTT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5