BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28060.1

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945230 jgi|Araly1|945230|scaffold_701459.1                        466    8e-131
  Ahg950476 jgi|Araly1|950476|scaffold_802363.1                        307    5e-83 


> Ahg945230 jgi|Araly1|945230|scaffold_701459.1
Length=278

 Score =  466 bits (252),  Expect = 8e-131
 Identities = 264/270 (98%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  159  TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTTCGGTT  218
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  9    TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTT  68

Query  219  TCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC  278
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69   TCCAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC  128

Query  279  AACTGCAAAAGGTGAGGATGCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT  338
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  129  AACTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT  188

Query  339  CTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACATTCCCTGG  398
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  189  CTGCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGG  248

Query  399  CCCTCTTTGATTCACACAAGAATCTCTCTT  428
            |||||||||||||| |||||||||||||||
Sbjct  249  CCCTCTTTGATTCAAACAAGAATCTCTCTT  278


> Ahg950476 jgi|Araly1|950476|scaffold_802363.1
Length=277

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 228/258 (88%), Gaps = 4/258 (2%)
 Strand=Plus/Plus

Query  154  ATTCATT--TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATT  211
            |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1    ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT  60

Query  212  TTCGGTTTCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACA  271
            | ||||| || |||||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct  61   TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA  120

Query  272  GGTGCACAACTGCAAAAGGTGAGGA-TGCAAATGAATGCGAGAGGTTCGCCAAGTACTAC  330
            |||| ||||||||||| || ||||| | | ||||| ||||| ||||| |||||||| |||
Sbjct  121  GGTGTACAACTGCAAAGGGCGAGGAGT-CTAATGACTGCGAAAGGTTTGCCAAGTATTAC  179

Query  331  CGCGCTCTCTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACA  390
            ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||| 
Sbjct  180  CGCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACT  239

Query  391  TTCCCTGGCCCTCTTTGA  408
            || || || |||||||||
Sbjct  240  TTTCCAGGTCCTCTTTGA  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20222462170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5