BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28060.1 Length=554 Score E Sequences producing significant alignments: (Bits) Value Ahg945230 jgi|Araly1|945230|scaffold_701459.1 466 8e-131 Ahg950476 jgi|Araly1|950476|scaffold_802363.1 307 5e-83 > Ahg945230 jgi|Araly1|945230|scaffold_701459.1 Length=278 Score = 466 bits (252), Expect = 8e-131 Identities = 264/270 (98%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 159 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTTCGGTT 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 9 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTT 68 Query 219 TCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 278 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 TCCAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 128 Query 279 AACTGCAAAAGGTGAGGATGCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 338 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 129 AACTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 188 Query 339 CTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACATTCCCTGG 398 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 189 CTGCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGG 248 Query 399 CCCTCTTTGATTCACACAAGAATCTCTCTT 428 |||||||||||||| ||||||||||||||| Sbjct 249 CCCTCTTTGATTCAAACAAGAATCTCTCTT 278 > Ahg950476 jgi|Araly1|950476|scaffold_802363.1 Length=277 Score = 307 bits (166), Expect = 5e-83 Identities = 228/258 (88%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 154 ATTCATT--TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 211 ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 60 Query 212 TTCGGTTTCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACA 271 | ||||| || |||||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct 61 TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA 120 Query 272 GGTGCACAACTGCAAAAGGTGAGGA-TGCAAATGAATGCGAGAGGTTCGCCAAGTACTAC 330 |||| ||||||||||| || ||||| | | ||||| ||||| ||||| |||||||| ||| Sbjct 121 GGTGTACAACTGCAAAGGGCGAGGAGT-CTAATGACTGCGAAAGGTTTGCCAAGTATTAC 179 Query 331 CGCGCTCTCTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACA 390 ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||| Sbjct 180 CGCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACT 239 Query 391 TTCCCTGGCCCTCTTTGA 408 || || || ||||||||| Sbjct 240 TTTCCAGGTCCTCTTTGA 257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20222462170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5