BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28070.2
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491970 jgi|Araly1|491970|fgenesh2_kg.7__1403__AT4G28070.2 2553 0.0
> Ahg491970 jgi|Araly1|491970|fgenesh2_kg.7__1403__AT4G28070.2
Length=1564
Score = 2553 bits (1382), Expect = 0.0
Identities = 1504/1564 (96%), Gaps = 3/1564 (0%)
Strand=Plus/Plus
Query 1 ATGCGATTGCTTCTTCTCTCCCTTCGCCGTGTAACTCTATTCTCGAGGCATCAACGATAC 60
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGCGCTTGCTTCTTCTCTCCCTTCGCCGTGTAAATCTATTCTCGAGGCATCAACGATAC 60
Query 61 GCTTTCGCTCCCATTCATAATTGTTTGATCTCTATCAATCCCAGCACATCTTCTTCAT-- 118
||||||||| | ||||| |||||||||||||| |||||||||||| | |||||||||
Sbjct 61 GCTTTCGCTTCTATTCACAATTGTTTGATCTCAATCAATCCCAGCTCGCCTTCTTCATCC 120
Query 119 C-TCTATTCTCGGCTTCTTCCTTCTGTTCGTCTCCACATTCCAATGGAGATGGAAAGATT 177
| | | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CTTGTTTTCTCGGTTTCTTCCTTCTGTTCGTCTCCGCATTCCAATGGAGATGGAAAGATT 180
Query 178 GCAGGGCCGTTAGTGGAGTATGAACGCAGAATCGTAGCTGGAGAGTTATTGGATGGAGAT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAGGGCCGTTAGTGGAGTATGAACGCAGAATCGTAGCTGGAGAGTTATTGGATGGAGAT 240
Query 238 TTATGTCAGCTAGGTACACTAAGAGAACTTCAGAGACTCTACGACGAGCTTGTTCAATCT 297
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTATATCAGCTAGGTACTTTAAGAGAACTTCAGAGACTCTACGACGAGCTTGTTCAATCT 300
Query 298 GCTGATGCTTGTCGATTGGATCGTTATTCTGCATCTGCAAAGTCCACTAGGAGTAATTGG 357
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 301 GCTGATGCTTGTCGATTGGATCGTTATTCTGCATCTGCAAAATCCACTAGGACTAATTGG 360
Query 358 TTCTGGAACAAATTTGTGTCTCACTCTTCTGTCTCTCCTGTCAAAGGCTTATACTTATAT 417
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TTCTGGAACAAATTTGTGCCTCACTCTTCTGTCTCTCCTGTCAAAGGCCTATACTTATAT 420
Query 418 GGAGGAGTAGGAACTGGAAAGACAATGCTCATGGACTTGTTTTTTCATCAATTGCCAGCT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GGAGGAGTAGGAACTGGAAAGACAATGCTCATGGACTTGTTTTTTCATCAATTGCCAGGT 480
Query 478 AGCTGGAGAACACAAAGGATTCACTTTCACAATTTCATGTTGAGTGTGCATAGCCGCCTG 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AGCTGGAGAACACAAAGGATTCACTTTCACAATTTCATGTTGAGTGTTCATAGCCGCCTG 540
Query 538 CAAAAGCACAAGGGTCTTGAAGATCCACTTGAAGTCGTTGGCCTGGAAATAGCTGACGAG 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 CAAAAGCACAAGGGTCTTGAAGATCCACTTGAAGTTGTTGGCCTGGAAATAGCCGACGAG 600
Query 598 GCTATATTACTATGCTTAGATGAGTTCATGGTCAATGATGTAGCTGATGCACTGATACTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTATATTACTATGCTTAGATGAGTTCATGGTCAATGATGTAGCTGATGCACTGATACTA 660
Query 658 AACCGTCTCTTTAGACACTTGTTTAACAATGGCATTATTCTTGTTGCTACATCAAACCGT 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACCGTCTTTTTAGACACTTGTTTAACAATGGCATTATTCTTGTTGCTACATCAAACCGT 720
Query 718 GCTCCAGATAATCTCTATGAAGGTGGTTTACAGAGGGACCTATTCCTTCCGTTTATTTCC 777
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 GCTCCAGATAATCTCTATGAAGGTGGTTTACAGAGGGACTTATTCCTTCCGTTTATTTCC 780
Query 778 ACACTAAAGGAAAGATGTGTCGTTCGTGAGATTGGCTCATCGGTGGACTATCGGAAACTG 837
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 781 ACGCTAAAGGAAAGATGTGTGGTTCGTGAGATTGGCTCATCGGTGGACTATCGGAAATTG 840
Query 838 ACCTCTGCTGAAGAGGGATTTTACTTCATTGGAAAGGATATCTCAGGCCTTCTAAAACAG 897
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 841 ACCTCTGCTGAAGAGGGATTTTACTTCATTGGGAAGGATATCTCTGGCCTTCTTAAACAG 900
Query 898 AAGTTTCAGCTGTTGGTTGGCGATCAACCGGCTGGTCCTCAAGTGGTTGAAGTAGTAATG 957
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 901 AAGTTTCAGCTGTTGGTTGGCGATCAACCAGCCGGTCCTCAAGTGGTTGAAGTAGTAATG 960
Query 958 GGAAGGAAATTGCAGGTTCCTCTAGCTGCTGATGGATGTGCCTACTTTCTTTTTGAAGAG 1017
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 961 GGAAGGAAATTGCAGGTTCCTCTGGCTGCGGATGGATGTGCCTACTTTCTTTTTGAAGAG 1020
Query 1018 CTGTGTGATAGACCCCTAGGCGCAGCCGATTATCTCGGATTATTCAAGAAATTTCATACT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTGTGTGATAGACCCCTAGGCGCAGCCGATTATCTCGGATTATTCAAGAAATTTCATACT 1080
Query 1078 TTGGCTCTGGAAGGTGTACCCTTCTTCGGGCTCCATAATAGGACTGCAGCTTACCGCTTT 1137
||||||||||||||||||||| |||||||||| || ||||| || ||||||||||| |||
Sbjct 1081 TTGGCTCTGGAAGGTGTACCCATCTTCGGGCTTCACAATAGAACCGCAGCTTACCGTTTT 1140
Query 1138 GTGACACTGGTTGATGTAATGTATGAGAACAAGGCCAGGCTTCTATGCACGGCAGAAGGT 1197
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 GTGACCCTGGTTGATGTAATGTATGAGACCAAGGCCAGGCTTCTATGCACGGCAGAAGGT 1200
Query 1198 AGCCCTCTAGAACTGCTGGAGAGAATAGTGACAATCTCTGATGCACAGCAAATAGCACCT 1257
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 AGCCCTCTAGAACTGCTGGAGAGAATAGTGACAATCTCTGATGCGCAGCAAATAGCACCT 1260
Query 1258 AGAACCTCTTCAAGATCAAGGAAGAGTGATGATCCCGACCTTTGCGTGGACAACGAGCTT 1317
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 AGAACATCTTCAAGATCAAGGAAGAGTGATGATCCCGACCTTTGTGTGGACAACGAGCTT 1320
Query 1318 GGTTTTGCTAAAGACCGCACCATTAGCAGATTAACGGAGATGAACAGCAAAGAATACTTA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTTTTGCTAAAGACCGCACCATTAGCAGATTAACGGAGATGAACAGCAAAGAATACTTG 1380
Query 1378 GAACAACATTCCAGAATGTTGCAGGAGAAGCAGCCTTCTTCTTAGTATTACTACAATGTG 1437
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 GAACAACATTCCAGAATGTTGCAGGAGAAGCAGCCTTCTTCTTAGTATTATTACAATGTG 1440
Query 1438 ATTAGAGATGCTGTCAAACCTGTTGGAACCATTGTTACTGAACACAAGGCCTCATAATGT 1497
|||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1441 ATTAGAGATGCTGTTAAACCTGTTGGAACCATTGTTACAGAACAAAAGGTCTCATAATGT 1500
Query 1498 ATTTACTCTCTGTGTTTGAGCACAGACCCATAGTTTTCTTGCAAGTTGATCATGTTCTCA 1557
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1501 ATTTATTCTGTGTGTTTGAGCACAGACCCATATTTTTCTTGCAAGTTGATCATGTTTTCA 1560
Query 1558 TCAG 1561
||||
Sbjct 1561 TCAG 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5