BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28085.1

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491969 jgi|Araly1|491969|fgenesh2_kg.7__1402__AT4G28085.2         399    6e-111


> Ahg491969 jgi|Araly1|491969|fgenesh2_kg.7__1402__AT4G28085.2
Length=407

 Score =  399 bits (216),  Expect = 6e-111
 Identities = 262/283 (93%), Gaps = 8/283 (3%)
 Strand=Plus/Plus

Query  1    AAGCAAAACGCAAAAACCAAAGATGGGTGAGATGATCAAAGCCAGACGCATACTCCTCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  35   AAGCAAAACGCAAAAACCAAAGATGGGTGAGATGATCAAAGCCAGACGCATACTCCTCTT  94

Query  61   CTCCATCGTATTCCTCTTCTTCTTCTCTCAGGCCTTTCTTTTGTGTTCAGCTGAGGGTGA  120
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||
Sbjct  95   CTCCATCGTATTCCTCTTCTTCTTCTCTCAGGCCCTTCTTTTGTGTTCAGCT-A--ATGA  151

Query  121  GCATGGCTCAAGAAATCTCGCAGTGGTGATGAAGAAAAGGGTGAAATACAGAGGACCTCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  GCATGGCTCAAGAAATCTCGCAGTGGTGATGAAGAAAAGGGTGAAATACAGAGGACCTCG  211

Query  181  CAACACAACAACATCCTCTGCAGCCTCAACTATTATGTTCCCAGGCTCCTTC-CATATTG  239
            |||||||||||| |||   ||||| ||  |||| ||||||||| | |||||| | |||||
Sbjct  212  CAACACAACAACCTCC---GCAGCTTCCGCTATGATGTTCCCAAGTTCCTTCTC-TATTG  267

Query  240  GTGCTGCTTCCTCTTTACTCCTTGCTCTTCTTTTATAAGCTCC  282
            |||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct  268  GTGCTGCTTCTTCTTTCCTCCTCGCTCTTCTTTTGTAAGCTCC  310


 Score =  113 bits (61),  Expect = 9e-25
 Identities = 86/97 (89%), Gaps = 6/97 (6%)
 Strand=Plus/Plus

Query  314  ATGATTCATGTAATTTGCTTTTCTC----G-ATTGATTTTGT-AGAAATTTCTCAAATGG  367
            |||||||||||||||||||||||||    | |||||| |||| | ||| |||||||||||
Sbjct  311  ATGATTCATGTAATTTGCTTTTCTCAATTGAATTGATCTTGTAAAAAAATTCTCAAATGG  370

Query  368  TCTAAAATTCTGTTTGTAAATTATTTGCTCTGTTTCA  404
            ||| ||| |||||||||||||||||||||||||||||
Sbjct  371  TCTTAAACTCTGTTTGTAAATTATTTGCTCTGTTTCA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16330592092


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5