BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28088.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328884 jgi|Araly1|328884|fgenesh1_pm.C_scaffold_7001111           366    3e-101


> Ahg328884 jgi|Araly1|328884|fgenesh1_pm.C_scaffold_7001111
Length=234

 Score =  366 bits (198),  Expect = 3e-101
 Identities = 223/235 (95%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGAATGGGTGCGAGATTTGCTGTGAAATAATGATCGCCATACTCATCCCTCCTCTA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGCGAATGGGTGCGAGATTTGCTGTGAAATAATGATCGCCATTCTCATCCCTCCTCTA  60

Query  61   GGGGTTTGTCTGAGGCATGGCTGTTGCACTACGGAATTCATGATATGTCTGATCCTAACG  120
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  61   GGGGTTTGTCTGAGGCATGGCTGTTGCACTACGGAGTTCATGATATGTTTGATCCTAACG  120

Query  121  CT-CTTGGGATACGTACCGGGGATCATCTACGCACTCTATGCAATCGTGTACGTGGATCG  179
            || || ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  121  CTTCTGGGG-TACGTACCGGGGATCATCTATGCACTTTATGCAATCGTGTACGTGGATCG  179

Query  180  TGATCAATTTTTCGATGAGTACCGTCGTCCACTTTTCTATGCCCAGTCACCGTGA  234
            ||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct  180  TGATCAATTCTTCGATGAGTACCGTCGTCCACTTTTTTATGCCCAATCACCCTGA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5