BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28090.1 Length=1644 Score E Sequences producing significant alignments: (Bits) Value Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110 2492 0.0 Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1 1352 0.0 > Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110 Length=1641 Score = 2492 bits (1349), Expect = 0.0 Identities = 1549/1645 (94%), Gaps = 15/1645 (1%) Strand=Plus/Plus Query 6 GTGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGACCATCATTTCTTTTGT 65 ||||||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||| Sbjct 6 GTGGTGGCTAAACGGAGGTGTTT-G--GATGATGATGACAACGACCATCATTTATTTTGT 62 Query 66 TAAAGCTGAAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGC-AAGAT-TGCTCTA 123 |||||||| ||||||||||||||||||||||||||||||||||||| || || | ||||| Sbjct 63 TAAAGCTGGAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-ATAT-CTCTA 120 Query 124 -GACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 182 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CG-TACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 179 Query 183 CTCACTCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCCTTTCT 242 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 180 CTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGCCCTTTCT 239 Query 243 CTTATCTTGGAATGGAGTGCATATGAGGAAAAATTCTTACCAAGATGGAGTGTATGGGAC 302 |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 240 CTTATCGTGGAATGGAGTGCACATGAGGAAAAATTCGTACCAAGATGGAGTGTATGGGAC 299 Query 303 GAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 362 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 359 Query 363 CGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGC-GGCCGGTGGTTATGGCA 421 |||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct 360 CGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGGTTATGGCA 418 Query 422 GCCTCCGTATATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGAAGATT 481 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 419 GCCTCCGTATCTACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGGAGATT 478 Query 482 TCACCTTCCTCGTAAACGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 541 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TCACCTTCCTCATAGGCGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 538 Query 542 ATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAGGGAGTAA 601 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 539 ATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGCCAAGGATTAA 598 Query 602 GTACTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGAGTATCAAATG 661 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 599 GTTCTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGATTATCAAATG 658 Query 662 TAGGGCTTCAAACCTCCCTGAATTTAGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 721 |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 659 TAGGGCTTCAAAGCTCCCTCAATTTCGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 718 Query 722 TCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCATGTTGGTCAAA 781 |||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct 719 TCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACATTCATGTTGGTCAAA 778 Query 782 CTTACTCTTTCTTGGTCACCATGGACCAACCTCCTCAAAACTATTCCATTGTCGTTTCCA 841 |||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 779 CTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACTCCATAGTCGTTTCCA 838 Query 842 CAAGATTTATCAACGCAGAAGTTGTGATCCGAGCCACTCTCCACTACTCCAACTCCAAAG 901 ||||||||||| |||||| |||| | | || ||||||||||||||||||||||||||| Sbjct 839 CAAGATTTATCGGCGCAGACGTTGGGGTGGGATCCACTCTCCACTACTCCAACTCCAAAG 898 Query 902 GTCATAAGATTATCACTGCGCGA-CGACCTGATCCAGATGATGTAGAATGGTCTATCAAA 960 | |||||||||||| || | || | |||||||||| ||||| ||||||||||||||||| Sbjct 899 GCCATAAGATTATCCCTTCTCGGGC-ACCTGATCCAAATGATATAGAATGGTCTATCAAA 957 Query 961 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCGGGGCCAAGGACTAACCCTCAAGGC 1020 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 958 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCCGGGCCAAGGACCGACCCTCAAGGC 1017 Query 1021 TCATACCATTATGGTAAAATGAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCT 1080 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1018 TCGTACCATTATGGTAAAATGAAGATTTCTAGGAATTTAATATTGGAAAGCTCAGCGGCT 1077 Query 1081 CTTGTGAAAAGAAAGCAACGCTATGCCATAAATGGCGTATCGTTCGTGCCTTCGGATACT 1140 ||||||||||||||||||||||||||||| | || || |||||||||||| |||||||| Sbjct 1078 CTTGTGAAAAGAAAGCAACGCTATGCCATTAGCGGTGTCTCGTTCGTGCCTCCGGATACT 1137 Query 1141 CCGCTGAAGCTTGCGGATCATTTCAAAATAAAAGATGTTTTTAAAGTTGGAACCATCCCT 1200 ||||||||||| ||||||||||| || |||||| ||||||||||||| |||| ||||||| Sbjct 1138 CCGCTGAAGCTGGCGGATCATTTTAAGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCT 1197 Query 1201 GACAAGCCGAGAAGAGGAGGAGGAATAAGGCTAGACACAGCAGTGATGGGAGCACACCAC 1260 ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 1198 GACAAGCCGAGAAGAGGAGGAGGGATGAGGCTAGACACATCAGTGATGGGAGCACACCAC 1257 Query 1261 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATCGTCCAAAGTTACCACCTC 1320 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1258 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTC 1317 Query 1321 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACGTGCGAGCAGA 1380 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1318 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACATGCGAGCAGA 1377 Query 1381 CGAGAGTATAACCTCAAGGATGCTATATCTCGCTCCACTACTCAAGTATATCCAAAATCT 1440 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1378 CGAGAGTATAACCTCAAGGATGCTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCT 1437 Query 1441 TGGACAGCTGTATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1500 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TGGACAGCTATATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1497 Query 1501 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTCATTCTCCAAATCACTCT 1560 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1498 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCT 1557 Query 1561 CCCAAAGATGAATACCCTTTGCC-AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1619 | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1558 CTCAAAGATGAATACCCTTTGCCCAAA-AATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1616 Query 1620 AAACATGTCCATCATCACTCCTTAG 1644 ||| ||||||||||||||||||||| Sbjct 1617 AAATATGTCCATCATCACTCCTTAG 1641 > Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1 Length=1807 Score = 1352 bits (732), Expect = 0.0 Identities = 1378/1682 (82%), Gaps = 75/1682 (4%) Strand=Plus/Plus Query 7 TGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGA-CCATCATTTCTTTTGT 65 |||||| |||| || | ||||| | |||||||||| | | | ||| |||||||||||| Sbjct 29 TGGTGGCTAAATGGCGCCGTTTGTACGATGATGATGGCCA-TATCCACCATTTCTTTTGT 87 Query 66 TAAAGCTGAAGA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCAAGATTGCT- 120 | ||||||| || |||| |||||| | |||||||||||||||||||||| ||| || Sbjct 88 TCAAGCTGATGATCCCTACCGTTTTTT-CGACTGGAGGGTCACTTACGGCAACATTTCTC 146 Query 121 --CTAGACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGA 178 || | || || |||| |||||||||||| || ||||||| || ||||||||| || | Sbjct 147 CACTTGGCA--TT-CCTCAAAGGGGAATCCTGATTAACGGACTATATCCTGGACCCGATA 203 Query 179 TTCGCTCAC-TCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCC 237 || ||| | ||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| Sbjct 204 TTTACTC-CGTCACCAACGACAATTTGATCATCAATGTTCACAACGATCTTGACGAACCC 262 Query 238 TTTCTCTTATCTTGGAATGGAGTGCATA-TGAGGAAAAATTCTTACCAAGATGGAGTGTA 296 ||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||| Sbjct 263 TTTCTCTTATCTTGGAACGGAGTGCA-ACTGAGGAAGAATTCTTACCAAGATGGAGTGTA 321 Query 297 TGGGACGAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGA 356 |||||||| ||||||||||||||| ||||| ||||||||||||| | | ||||||||||| Sbjct 322 TGGGACGACTTGTCCAATCCCACCGGGCAAAAATTACACTTATGCCATCCAAGTCAAAGA 381 Query 357 TCAGGTCGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGCGGCCGGTGGTTA 416 ||| ||||||||| |||||||||||||||||||||||| || ||||| |||||||||| Sbjct 382 CCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGCCGTTCACAAAGCCGCCGGTGGTTT 441 Query 417 TGGCAGCCTCCGTAT-ATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAG 475 |||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||| | Sbjct 442 TGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCTG 500 Query 476 AAGATTTCACCTTCCTCGTAAACGATTGGTATCGA-CGTAACCATACGACTTTGAAGAAA 534 |||||||||||||||| | ||||||| | || | | |||| | | |||||||| | Sbjct 501 GAGATTTCACCTTCCTCATTGGTGATTGGTTT-GAGCATGACCACAAGGCTTTGAAGGCA 559 Query 535 ATTTTGGATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAG 594 ||||||||| |||||| |||| |||| || ||||||| |||||| ||||||||||||| Sbjct 560 ATTTTGGATAGAGGACACAAGCTACC-TT--TGCCTGAAGGGGTTTTGATCAATGGCCAA 616 Query 595 GGAGTAAGT-ACTGTTTATTCTA-TCACCGTCGACAAAGGTAAAACGTACAGATTCAGAG 652 ||||| ||| || ||| ||| | | || ||| ||||||||||||| |||||||| ||| Sbjct 617 GGAGTCAGTTACA-TTTCTTC-ACTTACAGTCCACAAAGGTAAAACATACAGATTTAGAA 674 Query 653 TATCAAATGTAGGGCTTCAAACCTCCCTGAATTT-AGAAATATTAGGTCATCAGCTTAAG 711 |||| |||||||||||||||| | | |||||||| |||| | |||||||||| | ||| Sbjct 675 TATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAA-TCCAAGGTCATCAGATGAAG 733 Query 712 CTCATTGAGGTCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCAT 771 ||| | ||||| || |||||||| || | || ||||||| || || ||||||||||| Sbjct 734 CTCGTCGAGGTTGAGGGAACCCATACCATACAGTCCATGTATACCTCTCTCGACATTCAC 793 Query 772 GTTGGTCAAACTTACTCTTTCTTGGTCACCATGGACCAACCTC-CTCAAAACTATTCCAT 830 ||||| || ||||||| ||||||||||||||||||| ||| | ||| ||||| ||| Sbjct 794 GTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCTGAC-CAAGACTATGACAT 852 Query 831 TGTCGTTTCCACAAGATTTATCAACGCAGAAGT-TGTGATC-CGAGCCACTCTCCACTAC 888 |||||| ||||||| |||| | | | || | | || || | | ||||| |||||||| Sbjct 853 TGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCT-TGGTCTC-ATCCACTATCCACTAC 910 Query 889 TCCAACTCCA-A-A--G--GTCA-TAA--GA-T--TA-TCACTG-C---GC-GA-CGACC 929 |||||||| | | | | | || | | | | || | ||| | || || | ||| Sbjct 911 TCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATT-CTGTCCATGCTGAGCAACC 969 Query 930 TGATCCAGATGATGTAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTAAC 989 || || ||||| |||| ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 970 TG--CC-GATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGAACCAATCTAAC 1026 Query 990 TGCGTCGGGGCCAAGGACTAACCCTCAAGGCTCATACCATTATGGTAAAATGAAGATTTC 1049 ||||| ||||||||| |||||||||| ||||| ||||| |||||| ||| |||||||| Sbjct 1027 CGCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGAATCAAGATTTC 1086 Query 1050 TAGGACTTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGCCAT 1109 |||||||||||||||||||||||||||||| | |||| || ||||||||||| ||||| Sbjct 1087 TAGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAACGCTACGCCAT 1146 Query 1110 AAATGGCGTATCGTTCGT-GCCTTCGGATACTCCGCTGAAGCTTGCGGATCATTTCAAAA 1168 ||| || || ||||| || || | | ||||||||||| |||||||| ||| | ||||| | Sbjct 1147 AAACGGAGTGTCGTTTGTAGC-TGCAGATACTCCGCTAAAGCTTGCAGATTACTTCAAGA 1205 Query 1169 TAAAAGATGTTTTTAAAGTTGGAACCATCCCTGACAAGCCGAGAAGAGGAGGAGGAATAA 1228 | |||| ||||| ||||| |||| |||||||||||||||||||||||| ||||| || | Sbjct 1206 TCAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGGGGAGGGATGA 1265 Query 1229 GGCTAGACACAG-CAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTTTC 1285 | | || || | ||||||||||||||||||| | | | ||| ||||| ||||| |||| Sbjct 1266 GAATGGAGAC-GTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATTTC 1322 Query 1286 AAAACCGCGAGAAGATCGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGTTG 1345 |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| | Sbjct 1323 AAAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGGGTTGTCG 1382 Query 1346 GGATCAATAAAGGAATATGGTCACGTGCGAGCAGACGAGAGTATAACCTCAAGGATGCTA 1405 |||| ||| ||||| |||||| | ||||| |||||||||||||| |||| |||||||| Sbjct 1383 GGATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGGGATGCTA 1442 Query 1406 TATCTCGCTCCACTACTCAAGTATATCCAAAATCTTGGACAGCTGTATATGTGGCATTGG 1465 | ||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| ||| Sbjct 1443 TTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTAGCACTGG 1502 Query 1466 ACAATGTGGGGATGTGGAATCTAAGGAGCC-AGT-TCTGGGCGAGACAATACTTAGGTCA 1523 ||||||||||||||||||||||||||| | | | | |||||||| ||||||||||| || Sbjct 1503 ACAATGTGGGGATGTGGAATCTAAGGA-CTGAATAT-TGGGCGAGGCAATACTTAGGCCA 1560 Query 1524 ACAATTCTACCTTCGAGTTCATTCTCCAA-ATCACTCTCCCAAAGATGAATACCCTTTGC 1582 |||||||||||| | |||| |||||| || | ||||||| | ||||||||| | ||||| Sbjct 1561 ACAATTCTACCTCCAAGTTTATTCTCAAACA-CACTCTCTTAGAGATGAATATCTTTTGC 1619 Query 1583 CAAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAAAACATGTCC-ATCATCACTCCT 1641 | |||||||||||||||||||| || ||||||| ||| ||| ||| || | ||||||| Sbjct 1620 CTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC-TCCCATTACCACTCCT 1678 Query 1642 TA 1643 || Sbjct 1679 TA 1680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61630016410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5