BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28090.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110 2492 0.0
Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1 1352 0.0
> Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110
Length=1641
Score = 2492 bits (1349), Expect = 0.0
Identities = 1549/1645 (94%), Gaps = 15/1645 (1%)
Strand=Plus/Plus
Query 6 GTGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGACCATCATTTCTTTTGT 65
||||||| ||||||||||||||| | |||||||||||| ||||||||||||| ||||||
Sbjct 6 GTGGTGGCTAAACGGAGGTGTTT-G--GATGATGATGACAACGACCATCATTTATTTTGT 62
Query 66 TAAAGCTGAAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGC-AAGAT-TGCTCTA 123
|||||||| ||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 63 TAAAGCTGGAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-ATAT-CTCTA 120
Query 124 -GACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 182
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CG-TACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 179
Query 183 CTCACTCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCCTTTCT 242
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 180 CTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGCCCTTTCT 239
Query 243 CTTATCTTGGAATGGAGTGCATATGAGGAAAAATTCTTACCAAGATGGAGTGTATGGGAC 302
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 240 CTTATCGTGGAATGGAGTGCACATGAGGAAAAATTCGTACCAAGATGGAGTGTATGGGAC 299
Query 303 GAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 359
Query 363 CGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGC-GGCCGGTGGTTATGGCA 421
|||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 360 CGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGGTTATGGCA 418
Query 422 GCCTCCGTATATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGAAGATT 481
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 GCCTCCGTATCTACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGGAGATT 478
Query 482 TCACCTTCCTCGTAAACGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 541
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCACCTTCCTCATAGGCGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 538
Query 542 ATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAGGGAGTAA 601
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 539 ATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGCCAAGGATTAA 598
Query 602 GTACTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGAGTATCAAATG 661
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 GTTCTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGATTATCAAATG 658
Query 662 TAGGGCTTCAAACCTCCCTGAATTTAGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 721
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 TAGGGCTTCAAAGCTCCCTCAATTTCGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 718
Query 722 TCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCATGTTGGTCAAA 781
|||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 719 TCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACATTCATGTTGGTCAAA 778
Query 782 CTTACTCTTTCTTGGTCACCATGGACCAACCTCCTCAAAACTATTCCATTGTCGTTTCCA 841
|||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 779 CTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACTCCATAGTCGTTTCCA 838
Query 842 CAAGATTTATCAACGCAGAAGTTGTGATCCGAGCCACTCTCCACTACTCCAACTCCAAAG 901
||||||||||| |||||| |||| | | || |||||||||||||||||||||||||||
Sbjct 839 CAAGATTTATCGGCGCAGACGTTGGGGTGGGATCCACTCTCCACTACTCCAACTCCAAAG 898
Query 902 GTCATAAGATTATCACTGCGCGA-CGACCTGATCCAGATGATGTAGAATGGTCTATCAAA 960
| |||||||||||| || | || | |||||||||| ||||| |||||||||||||||||
Sbjct 899 GCCATAAGATTATCCCTTCTCGGGC-ACCTGATCCAAATGATATAGAATGGTCTATCAAA 957
Query 961 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCGGGGCCAAGGACTAACCCTCAAGGC 1020
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 958 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCCGGGCCAAGGACCGACCCTCAAGGC 1017
Query 1021 TCATACCATTATGGTAAAATGAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCT 1080
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 TCGTACCATTATGGTAAAATGAAGATTTCTAGGAATTTAATATTGGAAAGCTCAGCGGCT 1077
Query 1081 CTTGTGAAAAGAAAGCAACGCTATGCCATAAATGGCGTATCGTTCGTGCCTTCGGATACT 1140
||||||||||||||||||||||||||||| | || || |||||||||||| ||||||||
Sbjct 1078 CTTGTGAAAAGAAAGCAACGCTATGCCATTAGCGGTGTCTCGTTCGTGCCTCCGGATACT 1137
Query 1141 CCGCTGAAGCTTGCGGATCATTTCAAAATAAAAGATGTTTTTAAAGTTGGAACCATCCCT 1200
||||||||||| ||||||||||| || |||||| ||||||||||||| |||| |||||||
Sbjct 1138 CCGCTGAAGCTGGCGGATCATTTTAAGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCT 1197
Query 1201 GACAAGCCGAGAAGAGGAGGAGGAATAAGGCTAGACACAGCAGTGATGGGAGCACACCAC 1260
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 1198 GACAAGCCGAGAAGAGGAGGAGGGATGAGGCTAGACACATCAGTGATGGGAGCACACCAC 1257
Query 1261 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATCGTCCAAAGTTACCACCTC 1320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1258 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTC 1317
Query 1321 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACGTGCGAGCAGA 1380
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACATGCGAGCAGA 1377
Query 1381 CGAGAGTATAACCTCAAGGATGCTATATCTCGCTCCACTACTCAAGTATATCCAAAATCT 1440
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1378 CGAGAGTATAACCTCAAGGATGCTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCT 1437
Query 1441 TGGACAGCTGTATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGGACAGCTATATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1497
Query 1501 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTCATTCTCCAAATCACTCT 1560
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1498 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCT 1557
Query 1561 CCCAAAGATGAATACCCTTTGCC-AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1619
| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1558 CTCAAAGATGAATACCCTTTGCCCAAA-AATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1616
Query 1620 AAACATGTCCATCATCACTCCTTAG 1644
||| |||||||||||||||||||||
Sbjct 1617 AAATATGTCCATCATCACTCCTTAG 1641
> Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1
Length=1807
Score = 1352 bits (732), Expect = 0.0
Identities = 1378/1682 (82%), Gaps = 75/1682 (4%)
Strand=Plus/Plus
Query 7 TGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGA-CCATCATTTCTTTTGT 65
|||||| |||| || | ||||| | |||||||||| | | | ||| ||||||||||||
Sbjct 29 TGGTGGCTAAATGGCGCCGTTTGTACGATGATGATGGCCA-TATCCACCATTTCTTTTGT 87
Query 66 TAAAGCTGAAGA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCAAGATTGCT- 120
| ||||||| || |||| |||||| | |||||||||||||||||||||| ||| ||
Sbjct 88 TCAAGCTGATGATCCCTACCGTTTTTT-CGACTGGAGGGTCACTTACGGCAACATTTCTC 146
Query 121 --CTAGACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGA 178
|| | || || |||| |||||||||||| || ||||||| || ||||||||| || |
Sbjct 147 CACTTGGCA--TT-CCTCAAAGGGGAATCCTGATTAACGGACTATATCCTGGACCCGATA 203
Query 179 TTCGCTCAC-TCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCC 237
|| ||| | ||||||| ||||||||| ||||||||||||| |||||||| ||||| |||
Sbjct 204 TTTACTC-CGTCACCAACGACAATTTGATCATCAATGTTCACAACGATCTTGACGAACCC 262
Query 238 TTTCTCTTATCTTGGAATGGAGTGCATA-TGAGGAAAAATTCTTACCAAGATGGAGTGTA 296
||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||
Sbjct 263 TTTCTCTTATCTTGGAACGGAGTGCA-ACTGAGGAAGAATTCTTACCAAGATGGAGTGTA 321
Query 297 TGGGACGAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGA 356
|||||||| ||||||||||||||| ||||| ||||||||||||| | | |||||||||||
Sbjct 322 TGGGACGACTTGTCCAATCCCACCGGGCAAAAATTACACTTATGCCATCCAAGTCAAAGA 381
Query 357 TCAGGTCGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGCGGCCGGTGGTTA 416
||| ||||||||| |||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 382 CCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGCCGTTCACAAAGCCGCCGGTGGTTT 441
Query 417 TGGCAGCCTCCGTAT-ATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAG 475
|||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 442 TGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCTG 500
Query 476 AAGATTTCACCTTCCTCGTAAACGATTGGTATCGA-CGTAACCATACGACTTTGAAGAAA 534
|||||||||||||||| | ||||||| | || | | |||| | | |||||||| |
Sbjct 501 GAGATTTCACCTTCCTCATTGGTGATTGGTTT-GAGCATGACCACAAGGCTTTGAAGGCA 559
Query 535 ATTTTGGATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAG 594
||||||||| |||||| |||| |||| || ||||||| |||||| |||||||||||||
Sbjct 560 ATTTTGGATAGAGGACACAAGCTACC-TT--TGCCTGAAGGGGTTTTGATCAATGGCCAA 616
Query 595 GGAGTAAGT-ACTGTTTATTCTA-TCACCGTCGACAAAGGTAAAACGTACAGATTCAGAG 652
||||| ||| || ||| ||| | | || ||| ||||||||||||| |||||||| |||
Sbjct 617 GGAGTCAGTTACA-TTTCTTC-ACTTACAGTCCACAAAGGTAAAACATACAGATTTAGAA 674
Query 653 TATCAAATGTAGGGCTTCAAACCTCCCTGAATTT-AGAAATATTAGGTCATCAGCTTAAG 711
|||| |||||||||||||||| | | |||||||| |||| | |||||||||| | |||
Sbjct 675 TATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAA-TCCAAGGTCATCAGATGAAG 733
Query 712 CTCATTGAGGTCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCAT 771
||| | ||||| || |||||||| || | || ||||||| || || |||||||||||
Sbjct 734 CTCGTCGAGGTTGAGGGAACCCATACCATACAGTCCATGTATACCTCTCTCGACATTCAC 793
Query 772 GTTGGTCAAACTTACTCTTTCTTGGTCACCATGGACCAACCTC-CTCAAAACTATTCCAT 830
||||| || ||||||| ||||||||||||||||||| ||| | ||| ||||| |||
Sbjct 794 GTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCTGAC-CAAGACTATGACAT 852
Query 831 TGTCGTTTCCACAAGATTTATCAACGCAGAAGT-TGTGATC-CGAGCCACTCTCCACTAC 888
|||||| ||||||| |||| | | | || | | || || | | ||||| ||||||||
Sbjct 853 TGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCT-TGGTCTC-ATCCACTATCCACTAC 910
Query 889 TCCAACTCCA-A-A--G--GTCA-TAA--GA-T--TA-TCACTG-C---GC-GA-CGACC 929
|||||||| | | | | | || | | | | || | ||| | || || | |||
Sbjct 911 TCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATT-CTGTCCATGCTGAGCAACC 969
Query 930 TGATCCAGATGATGTAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTAAC 989
|| || ||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 970 TG--CC-GATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGAACCAATCTAAC 1026
Query 990 TGCGTCGGGGCCAAGGACTAACCCTCAAGGCTCATACCATTATGGTAAAATGAAGATTTC 1049
||||| ||||||||| |||||||||| ||||| ||||| |||||| ||| ||||||||
Sbjct 1027 CGCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGAATCAAGATTTC 1086
Query 1050 TAGGACTTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGCCAT 1109
|||||||||||||||||||||||||||||| | |||| || ||||||||||| |||||
Sbjct 1087 TAGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAACGCTACGCCAT 1146
Query 1110 AAATGGCGTATCGTTCGT-GCCTTCGGATACTCCGCTGAAGCTTGCGGATCATTTCAAAA 1168
||| || || ||||| || || | | ||||||||||| |||||||| ||| | ||||| |
Sbjct 1147 AAACGGAGTGTCGTTTGTAGC-TGCAGATACTCCGCTAAAGCTTGCAGATTACTTCAAGA 1205
Query 1169 TAAAAGATGTTTTTAAAGTTGGAACCATCCCTGACAAGCCGAGAAGAGGAGGAGGAATAA 1228
| |||| ||||| ||||| |||| |||||||||||||||||||||||| ||||| || |
Sbjct 1206 TCAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGGGGAGGGATGA 1265
Query 1229 GGCTAGACACAG-CAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTTTC 1285
| | || || | ||||||||||||||||||| | | | ||| ||||| ||||| ||||
Sbjct 1266 GAATGGAGAC-GTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATTTC 1322
Query 1286 AAAACCGCGAGAAGATCGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGTTG 1345
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1323 AAAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGGGTTGTCG 1382
Query 1346 GGATCAATAAAGGAATATGGTCACGTGCGAGCAGACGAGAGTATAACCTCAAGGATGCTA 1405
|||| ||| ||||| |||||| | ||||| |||||||||||||| |||| ||||||||
Sbjct 1383 GGATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGGGATGCTA 1442
Query 1406 TATCTCGCTCCACTACTCAAGTATATCCAAAATCTTGGACAGCTGTATATGTGGCATTGG 1465
| ||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| |||
Sbjct 1443 TTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTAGCACTGG 1502
Query 1466 ACAATGTGGGGATGTGGAATCTAAGGAGCC-AGT-TCTGGGCGAGACAATACTTAGGTCA 1523
||||||||||||||||||||||||||| | | | | |||||||| ||||||||||| ||
Sbjct 1503 ACAATGTGGGGATGTGGAATCTAAGGA-CTGAATAT-TGGGCGAGGCAATACTTAGGCCA 1560
Query 1524 ACAATTCTACCTTCGAGTTCATTCTCCAA-ATCACTCTCCCAAAGATGAATACCCTTTGC 1582
|||||||||||| | |||| |||||| || | ||||||| | ||||||||| | |||||
Sbjct 1561 ACAATTCTACCTCCAAGTTTATTCTCAAACA-CACTCTCTTAGAGATGAATATCTTTTGC 1619
Query 1583 CAAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAAAACATGTCC-ATCATCACTCCT 1641
| |||||||||||||||||||| || ||||||| ||| ||| ||| || | |||||||
Sbjct 1620 CTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC-TCCCATTACCACTCCT 1678
Query 1642 TA 1643
||
Sbjct 1679 TA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5