BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28100.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491965 jgi|Araly1|491965|fgenesh2_kg.7__1398__AT4G28100.1 1993 0.0
> Ahg491965 jgi|Araly1|491965|fgenesh2_kg.7__1398__AT4G28100.1
Length=1255
Score = 1993 bits (1079), Expect = 0.0
Identities = 1201/1260 (95%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60
Query 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTTAAAAGACTCAGATTTGAGAAAACGTTTCA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTAAAAAGACTCAGATTTGAGAAAGCGTTTCA 120
Query 121 ATATCTAAATCCATTTCTCTCCCTCTCTCTTTAGCCATTTAGAATGAAGAAAAGtctcac 180
|| ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||
Sbjct 121 ATTTCTAAATCCATTTCTCT--CTCTCTCTCTAGCCATTTACAATGAAGAAGAGTCTCAC 178
Query 181 tctactcatcctcctcctctgttctctcctcttctccACCGTCTTGAGCAACCTACTCGT 240
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TTTACTCATCCTCCTCCTCTGTTCTCTCCTCTCCTCCACCGTCTTGAGCAACCTACTCGC 238
Query 241 CGAACCGGTCCAACCCAACACCGTACCAGCCTTCCCCGTCGAAACCCAAGCTCAAAGCTG 300
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 239 CGAACCGGTCCAACCCAACACTGTACCGGCATTCCCCGTCGAAACCCAAGCTCAAAGCTG 298
Query 301 CCGACTTGACCTCTCCAACGAGCTATTCGGTGGCGTCAACGAAGCTTGCGGAAGAAACCT 360
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 299 CCGACTTGACCTCTCCAACGAGCTCTTTGGTGGTGTCAACGAAGCTTGCGGAAGAAACCT 358
Query 361 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 418
Query 421 TGCTCTCCAGTTACCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 480
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCTCTCCTGCTCCCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 478
Query 481 GAAGCCTGACGACTCTCAGAAGTGCGTCAACACATTGCAAAGTGCGCTTTTGACTAAACA 540
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 479 GAAGCCTGACGACTCACAGAAGTGCGTCAACACATTGCAAAGCGCGCTTTTGACCAAACA 538
Query 541 AATCAAGATCCCTCAGCCTAATTCTAGCTGTGACGCAATCTTGTGCTTCTGTGGTATTCG 600
|||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||
Sbjct 539 AATCAAGATCCCTCAGCCTAATTCAAGCTGCGATGCAATCTTGTGCTTCTGTGGCATTCG 598
Query 601 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 658
Query 661 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGCCGGAACTCTTCTTA 720
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 659 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGTCGGAATTCTTCGTA 718
Query 721 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAAGGTAAGAGGAGGAAACAA 780
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 719 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAATGTTAGAGGAGGAAACAA 778
Query 781 GAAGACAACAACAGAGAGAGGGACTAAGATGATGAGCAAAGATTGCCAGCTCATGGGACT 840
||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 779 GAAGACAACAACAGAGAGAGGGAGTAAGATGATGAGCAAAGACTGCAAGCTCATGGGACT 838
Query 841 CACATGGCTACTAGCTCGTAACAAAACGGCATACATTCCCACTGTTTCGGCTGTGTTAAG 900
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 839 CACATGGCTACTGGCTCGTAACAAAACGGCATACATTCCCACCGTTTCAGCTGTGTTAAG 898
Query 901 AGCTATTATGTATAGTCCACACCCACCTCACCTCAACAAGTGTAGTCCTGACCAAGAGAA 960
||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 899 AGCCATTATGTATAGTCCACACCCTCCTCATCTCAACAAGTGCAGTCCTGACCAAGAGAA 958
Query 961 CATGCCTTTAGCAGTTGACTCTCTACAGTTTCAAAAGAGCTTCTCTTCATCATCTCATCT 1020
|||||||||||| |||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct 959 CATGCCTTTAGCCGTTGACTCTCTACAGTTTGAGAGGAGCCTCTCTTCATCATCTCATCT 1018
Query 1021 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTATCTTTCTCTTTCTACTGTGAtt 1080
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1019 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTACCGGTCTCTTTCTACTGTGATT 1078
Query 1081 tttttCTGTATTTTTTGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1140
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTCT-T-TATTTTTTGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1136
Query 1141 ATGTGT--ATGTAAATGCTGTGCTCtttttttGGTTCTGCAAACTCTTAACCCTCATTTT 1198
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 ATGTGTGTATGTAAATGCTGTGCTCTTCTTTTGGTTCTGCAAACTCTTAACCCTCATTTT 1196
Query 1199 TTGGTTTTAACTGTGTTTTGTCCCATTTAACACTTTGTACGAGGTCTTGAAATTTTAAAA 1258
| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1197 T-GGTTTTAACTGTGTTTTGTCCAATTTAACACTTTGTCCGAGGTCTTGAAATTTTAAAA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5