BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28110.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328881 jgi|Araly1|328881|fgenesh1_pm.C_scaffold_7001108 1199 0.0
> Ahg328881 jgi|Araly1|328881|fgenesh1_pm.C_scaffold_7001108
Length=852
Score = 1199 bits (649), Expect = 0.0
Identities = 794/861 (92%), Gaps = 21/861 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCTTGTTGTGATAAAAATGGAGTGAAGAAGGGACCATGGACTGCTGAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGAAGGTCACCTTGTTGTGATAAAAATGGAGTGAAGAAGGGACCATGGACGGCTGAG 60
Query 61 GAGGATCAGAAACTCATCGATTATATTCGATTTCATGGTCCTGGCAATTGGCGTACGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAGGATCAGAAACTCATCGATTATATTCGATTTCATGGTCCTGGCAATTGGCGTATTCTT 120
Query 121 CCCAAAAATGCTGGACTCCATAGATGTGGAAAAAGCTGCCGTCTTCGATGGACCAATTAT 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAAAATGCTGGACTCCAAAGATGCGGAAAAAGCTGCCGTCTTCGATGGACCAATTAT 180
Query 181 CTAAGACCGGACATCAAGAGAGGAAGATTCTCGTTCGAGGAAGAAGAAACTATCATTCAG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTAAGACCGGACATCAAGAGAGGAAGATTCTCCTTCGAGGAAGAAGAAACTATCATTCAG 240
Query 241 CTACACAGTGTTATGGGAAACAAGTGGTCAGCAATAGCCGCTCGTCTACCAGGGAGGACC 300
||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||
Sbjct 241 CTACACAGTGTTATGGGAAACAAGTGGTCTGCCATAGCAACTCGTCTACCAGGAAGGACC 300
Query 301 GATAACGAAATAAAAAACCATTGGAACACTCACATCCGCAAGAGACTTGTAAGGAGTGGT 360
||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct 301 GATAACGAAATCAAAAATCATTGGAACACTCATATCCGCAAGAGACTTATAAGGAGTGGT 360
Query 361 ATCGACCCTGTTACTCATTCTCCACGCCTTGATCTTCTTGATTTGTCCTCACTTTTGAG- 419
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 ATCGATCCTGTTACTCACTCTCCACGCCTTGATCTTCTTGATTTGTCCTCACTTTT-AGG 419
Query 420 TGCACTTTTCAACCAGCCAAACTTTTCAGCAGTTGCAACACATGCGTCTTCTCTTCTTAA 479
|||||||||||| ||||||||||||||| | | ||||||||||||||| |||||||||||
Sbjct 420 TGCACTTTTCAATCAGCCAAACTTTTCATCGGCTGCAACACATGCGTCGTCTCTTCTTAA 479
Query 480 TCCTGATGTATTGAGGTTGGCCTCTCTACTACT-GCCAC---TTCAAAACCCTAATCCAG 535
|||||||||||||||| | |||||||| || || ||||| |||||||||||||||||
Sbjct 480 TCCTGATGTATTGAGGCTAGCCTCTCTTCT-CTTGCCACAGCTTCAAAACCCTAATCCAA 538
Query 536 TTTACCCATCG--AA-CCTCGACCAAAATCTTCAAACTCCAAAT-ACATCATCAGAATCG 591
| ||| ||||| || ||||||||||||||||||||| |||| | ||||||||||||| |
Sbjct 539 TGTACGCATCGTCAAACCTCGACCAAAATCTTCAAACCCCAA-TCACATCATCAGAAT-G 596
Query 592 T-CTCAACCACAAGCTGAGACTAGTACAGTCCCAACAAACTATGAAACTTCATCATTGGA 650
| ||||||||||||| |||| || ||| |||||||||| ||||||||||||| || ||
Sbjct 597 TTCTCAACCACAAGCCGAGAGTACTAC---CCCAACAAACAATGAAACTTCATCTTTCGA 653
Query 651 GCCTATGAACGCAAGACTCGACGACGTTGGT-CTTGCAGATGTATTACCACCTTTGTCAG 709
|| |||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 654 GCTTATGAACGCAAGACTCGACGACGTTGCTTCC-GCAGATGTATTACCACCTTTGTCAG 712
Query 710 AGAGTTTTGACTTAGACTCGCTCATGTCAACGCCAATGTCTTCTCCACGACAAAATAGCA 769
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 713 AGAGTTTTGACTTAGAATCGCTCATGTCAACGCCAATGTCTTCTCCACAACAAGATAGCA 772
Query 770 TTGAAGCAGAAACCAACTCCAGCACTTTCTTCGACTTTGGAATTCC-GGAAGATTTCATC 828
||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 773 TTGAAGCAGGAACCAACTCCAGCAGTTTCTTCGACTTTGGT-TTCCCGGAAGATTTCATC 831
Query 829 TTAGATGACTTTATGTTTTAA 849
|||||||||||||||||||||
Sbjct 832 TTAGATGACTTTATGTTTTAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5