BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28130.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328880 jgi|Araly1|328880|fgenesh1_pm.C_scaffold_7001107 2045 0.0
> Ahg328880 jgi|Araly1|328880|fgenesh1_pm.C_scaffold_7001107
Length=1386
Score = 2045 bits (1107), Expect = 0.0
Identities = 1293/1383 (93%), Gaps = 12/1383 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCAGTCAGAGACGAGTATGGAAAAATACAAGAATTTATCAGATTTCCTTAAGAAA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCAGTCAGAGACGAGCATGGAAAAATACAAGAATTTATCAGATTTCCTTAAGAAA 60
Query 61 TTCTTCATACCTTCGTACGTTCTCTCGCCTGAAGACGAGCCTGAGGCGCAAATCAGTTGT 120
|||| ||| ||||||||||||||||||||||||| |||||||| ||| |||| |||| ||
Sbjct 61 TTCTACATTCCTTCGTACGTTCTCTCGCCTGAAGCCGAGCCTGTGGCACAAACCAGTAGT 120
Query 121 ACAACTGCACCTGAGAACCCAATCCTCGTATTCATCAACTCCAAAAGCGGAGGTCAACTA 180
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTACACCACCTGAGAGCCCAATCCTCGTATTCATCAACTCCAAAAGCGGAGGTCAACTA 180
Query 181 GGTGCAGAACTCATCCTTACCTACCGTACTCTGCTCAACGACAAGCAGGTTTTTGATCTG 240
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 GGTGCAGAACTCATACTTACCTACCGCACTCTACTCAACGACAAGCAGGTTTTTGATCTT 240
Query 241 GAGGTAGAGACCCCAGATAAAGTGCTGCAGAGAATTTATCTTAACCTAGAGAGGTTAAAA 300
|||| |||||| |||||||| |||||||||||||| |||||||| ||||||||| |||||
Sbjct 241 GAGGAAGAGACTCCAGATAAGGTGCTGCAGAGAATCTATCTTAATCTAGAGAGGCTAAAA 300
Query 301 GACGATAGTTTGGCTAGCAAGATTCGGGACAAGTTGAAAATCATTGTTGCAGGGGGAGAT 360
|||||| |||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 301 GACGATGGTTTCGCAAGCAAGATTCGGGACAAGTTGAAAATAATGGTTGCAGGGGGAGAT 360
Query 361 GGAACAGCTGGTTGGCTCCTTGGAGTTGTTTCTGATCTTAATTTATCCAATCCACCTCCA 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGAACAGCTGGTTGGCTCCTTGGAGTTGTTTCTGATCTTAAATTATCCAATCCACCTCCA 420
Query 421 ATTGCTACGGTTCCTTTAGGTACCGGTAACAACCTTCCATTTGCATTTGGATGGGGTAAG 480
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 ATTGCTACGGTTCCTTTGGGTACCGGAAACAACCTTCCATTTGCATTTGGATGGGGTAAG 480
Query 481 AAAAATCCTGGAACAGATAGGTCTTCGGTGGAGTCTTTTTTGGGTAAAGTGATCAATGCA 540
|||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||
Sbjct 481 AAAAATCCTGGAACAGATAGGTCTTCTGTGGATTCTTTTTTGGATAAAGTGATCAACGCA 540
Query 541 AAAGAGATGAAGATAGACAATTGGAAGATACTTATGAGGATG-AAGCATCCCAAGGAAGG 599
|||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||| |||
Sbjct 541 AAAGAGATGAAGATAGACAATTGGCAGATACTTATGAGGATGAAAGC-TCCTAAGCAAGA 599
Query 600 CTCTTGTGATA-T--T--A-CTCTTAAGCTACCACATTCTCTTCCTCGT-ATTTTCCCAT 652
||||||||||| | | | |||||||||||||||||||||||| |||| |||| ||||
Sbjct 600 CTCTTGTGATACTAGTGCACCTCTTAAGCTACCACATTCTCTTCATCGTGCTTTT-CCAT 658
Query 653 CAGATCAAGAAAATATGGAAGGTTACCATACATATCGTGGGGGATTCTGGAATTACTTCA 712
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |
Sbjct 659 CAGATCAAGAAAATATGGAAGATTACCAAACATTTCGTGGGGGATTCTGGAATTACTTTA 718
Query 713 GCTTGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCCCAGAGAAAACTGCACCCGG 772
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 719 GCTTGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCCCAGAGAAAATTGCACCCAG 778
Query 773 AAAGGTTTAAAAATCAGCTAGTTAATCAGAGCACATATCTAAAGCTTAGTTGCACACAAG 832
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAAAGTTTAAAAATCAGCTAGTTAATCAGAGCACATATCTAAAGCTTAGTTGCACACAAG 838
Query 833 GATGGTTTTTTGCCTCTCTTTTTCACCCTTCTTCACAAAACATAGCTAAGCTTGCAAAAA 892
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 839 GATGGTTTTTTGCCTCTCTTTTTCACCCTGCTTCACAAAACATAGCTCAGCTTGCAAAGG 898
Query 893 TTCAGATTTGTGATAGAAA-TGGCCAATGGAATGATCTTCATATTCCCCAAAGCATAAGG 951
||||||||||| ||| ||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 899 TTCAGATTTGTAATA-AAAGTGGCCAATGGAATGACCTTCACATTCCCCAAAGCATAAGG 957
Query 952 TCCATAGTATGTTTGAATCTTCCTAGTTTTTCTGGAGGACTAAATCCTTGGGGAACACCA 1011
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 958 TCCATAGTCTGTTTGAATCTTCCTAGCTTTTCTGGAGGACTAGATCCTTGGGGAACACCA 1017
Query 1012 AATCCTAAGAAACAACGTGATAGAAGCCTAACTGCACCATTCGTTGACGATGGACTCATC 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AATCCTAAGAAACAACGTGATAGAAGCCTAACTGCACCATTCGTTGACGATGGACTCATC 1077
Query 1072 GAAATCGTTGGGTTTCGAAATGCTTGGCATGGTCTTATTCTGCTCTCTCCAAATGGTCAT 1131
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 1078 GAAATCGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCACTCCAAATGGACAT 1137
Query 1132 GGGACAAGACTTGCACAGGCAAACCGAGTTCGATTAGAGTTTAAGAAAGGTGCGGCGAAG 1191
||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 1138 GGGACAAGACTTGCACAGGCAAACCGAATTCGATTCGAGTTCAAGAAAGGTGCGGCGAAG 1197
Query 1192 CATGCTTATATGAGAATAGATGGAGAGCCATGGAAACAACCACTGCCATCAAATGATGAA 1251
||||| || |||||||| |||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1198 CATGCATACATGAGAATGGATGGAGAGCCATGGAAACAACCACTTCCATTAGATGATGAA 1257
Query 1252 ACTGTGATGGTAGAGATCTCACATCATGGACAAGTCAACATGCTTGCAACCCAAAATTGC 1311
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1258 ACTGTGATGGTAGAGATCTCACATCATGGACAAGCCAACATGCTTGCAACCCACAATTGC 1317
Query 1312 AGGTCCAAAAGCATGTATGAGTCTTCTTCTATAATCCGGTTTAGTAATGATGAAGATGAC 1371
|| ||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 1318 AGCTCCAAAAGCATGTTTGAGTCTTCTTCCACAATCCGGTTTAGTGATGATGAAGATGAC 1377
Query 1372 TCA 1374
|||
Sbjct 1378 TCA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5