BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28140.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491962 jgi|Araly1|491962|fgenesh2_kg.7__1395__AT4G28140.1 1493 0.0
> Ahg491962 jgi|Araly1|491962|fgenesh2_kg.7__1395__AT4G28140.1
Length=1156
Score = 1493 bits (808), Expect = 0.0
Identities = 972/1047 (93%), Gaps = 27/1047 (3%)
Strand=Plus/Plus
Query 123 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTTGATCAT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 105 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTGGATCAT 164
Query 183 TCTTTTGGAGGAGAAGCTTCTTCCACGTCCCCAAGATCTATGAAGAAAATGAAGAGTCCT 242
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 165 TCTTTT---GGAGAAGCTTCTTCCACGTCCCCAAGGTCTATGAAGAAGATGAAGAGTCCT 221
Query 243 AGTCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGAGGCTTTCCCT 302
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 222 AATCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGGGGCTTTCCCT 281
Query 303 TTTTCTCTCGATCCAACACTTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGGTA 362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTTTCTCTCGATCCAACAATTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGG-- 339
Query 363 CTTGAGCAACGACAAGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCCTTTAGTCCT 422
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 340 -TTGAGCAACAACATGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCGTTTAGTCCT 398
Query 423 CAACAACAACAACAGCAGCAGCAGTATATGGCCCAGTACTGGAGTGACACATTGAATCTG 482
||||||| | | |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 399 ---CAACAAC-A-A-CAGCAGCAGTATATGGCCAAGTACTGGAGTGACACATTGAATTTG 452
Query 483 AGTCCAAGAGGAAGAATGATGATGATGATGAGCCAAGAAGCTGTTCAACCTTACATCGCA 542
||||||||||||||||||||||| | |||||||||||| |||||||||| || | ||||
Sbjct 453 AGTCCAAGAGGAAGAATGATGAT--T-ATGAGCCAAGAAACTGTTCAACCCTATAGCGCA 509
Query 543 ACGAAGCTGTACAGAGGAGTGAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 602
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 510 ACCAAGCTGTACAGAGGAGTAAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 569
Query 603 AAGCCACGAAGCAGGGCACGTCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 662
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 570 AAGCCACGAAGCAGGGCACGGCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 629
Query 663 ATGGCCTACGACCGCCAAGCCTTCAAATT-ACGAGGCCACAGCGCAACACTGAATTTCCC 721
||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||
Sbjct 630 ATGGCCTACGACCGCCAAGCCTTCAAATTGAGG-GGCCACAGCGCAACACTGAACTTCCC 688
Query 722 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCGGATCAGAAAGA 781
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 689 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCAGATCAGAAGGA 748
Query 782 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAGAGCAAGGAACTACCGGTGATTGA 841
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 749 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAAAGCAAGGAACTAGCGGTCATTGA 808
Query 842 TGTTGGGAGAGAGGAAGGTATGGCTGAGGCATGGTACAATGCCATTACATCGGGATGGGG 901
|||||||||||| ||||| ||||||||||| ||||||||||| | |||||||| |||||
Sbjct 809 TGTTGGGAGAGACGAAGGCATGGCTGAGGCGTGGTACAATGCGGTGACATCGGGTTGGGG 868
Query 902 TCCTGAAAGTCCTCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCATCAGAAAGCTC 961
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 869 TCCTGAAAGTCCCCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCA---GAAAGCTC 925
Query 962 ATCTTCTTCTCCTCTCTCTTGTCCTATGAGGCCTTTCTTTTGAAAAAGTTTATAAACCCA 1021
|||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| ||||
Sbjct 926 ATCTTCTTCTTCTCTCTCTTGTCCCATGAGACCTTTCTTTTGAAAAAGGTTATAAGCCCA 985
Query 1022 CATTGTGTTGTAGGTTATAGTTTAGGGTTATGCTCATTGGCATTTGGATGGAGGCAATTT 1081
|||||| | ||||||| |||||||||||| | ||||||||||||||||||||| || |||
Sbjct 986 CATTGT-T-GTAGGTTGTAGTTTAGGGTTCTACTCATTGGCATTTGGATGGAGACAGTTT 1043
Query 1082 TTGTGATCTCCCA-TTCCACCACATATCAGTCATTATATGTGTCTACCTTTTCTCTGTAT 1140
||||||||||||| ||| || |||| ||||||||||||||||||||||| |||||||||
Sbjct 1044 TTGTGATCTCCCACTTC-AC-ACAT--CAGTCATTATATGTGTCTACCTTCTCTCTGTAT 1099
Query 1141 TTCTATCATTATCATTGTTTTTATTAT 1167
||||||| | ||||||| ||||| |||
Sbjct 1100 TTCTATCGTCATCATTGATTTTAATAT 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5