BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28150.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491960 jgi|Araly1|491960|fgenesh2_kg.7__1393__AT4G28150.1 1897 0.0
> Ahg491960 jgi|Araly1|491960|fgenesh2_kg.7__1393__AT4G28150.1
Length=1231
Score = 1897 bits (1027), Expect = 0.0
Identities = 1166/1233 (95%), Gaps = 10/1233 (1%)
Strand=Plus/Plus
Query 1 CTCTTTGAAACGTCAGGGAAAGAGAATCCCGCAATActctctcctctctctttttttttt 60
|||||||||||||||||||||||||||||||||| ||||||||||||||| | | | |||
Sbjct 1 CTCTTTGAAACGTCAGGGAAAGAGAATCCCGCAAAACTCTCTCCTCTCTCCTCTCTGTTT 60
Query 61 ttttCTGGGTCGAAGTTTGGTTCTTTGTTGGATAATGATGGTTTTTGACAGTGAATCTAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTTTCTGGGTCGAAGTTTGGTTCTTTGTTGGATAATGATGGTTTTTGACAATGAATCTAA 120
Query 121 CCTAGACCGATTCTTACGCTGCACTACACCGATTGTGCCTGCCTATTCCCTCCCAAAGAC 180
||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 CCTAGACCGATTCCTACGCTGCACTACACCAATTGTCCCTGCCTATTCCCTCCCAAAGAC 180
Query 181 ACAGATCAAGAACCTTAATCCTCTATGGTATCCGTTGGAGAGCCAGAGCGTCGAGTATTT 240
||||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct 181 ACAGATCAAGAACCTGAATCGTCTATGGTACCCTTTGGAGAGCCAGAGCGTAGAGTATTT 240
Query 241 CAGGTTGGGAGATTTTTGGGATTGTTTCGACGAGTGGAGTGCTTACGGTGCAGGTGTCCC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CAGGTTGGGAGATTTTTGGGATTGTTTCGACGAGTGGAGCGCTTACGGTGCAGGTGTCCC 300
Query 301 CATTGTATCGGAAACGGGCGAAACATTGGTCCAATACTATGTTCCTTACCTCTCTGCAAT 360
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 CATTGTCTCGGAAACCGGCGAGACATTGGTCCAGTACTATGTTCCTTACCTCTCTGCCAT 360
Query 361 CCAGATTTTCACCTCTCATTCTGTTATCAATACTCTTAGGGAGGAGACAGAATCAGGGGA 420
||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||
Sbjct 361 CCAGATTTTCACCTCTCATTCTGTTCTCAATGCTCTAAGGGAGGAGACGGAATCAGGGGA 420
Query 421 TTCAGGGAGCGAGTCGTGTAGCGAGGAGTGGAGATGGGAAGGATGTTCTTCGTCTGAAGA 480
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TTCAGGGAGTGAGTCATGTAGCGAGGAGTGGAGATGGGAAGGATGTTCTTCGTCTGAGGA 480
Query 481 AGGGTTTGATCATCAAGAACCTCTCGATCGCCTCGGTTACTCTTACTTGCAGTATTTCGA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGATTTGATCATCAAGAACCTCTCGATCGCCTCGGTTACTCTTACTTGCAGTATTTCGA 540
Query 541 GAGATGTACACCTTACTCTAGAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATGTACACCTTACTCTAGAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAG 600
Query 601 ATACGTAGGGTTGAGGTCATTGAGGAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGT 660
| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 ACACGCAGGCTTGAGGTCATTGAGAAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGT 660
Query 661 TGCTTGGTATCCAATCTATCACATTCCCATGAATAGAAGCATAAAAGACTTGTCTACTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCTTGGTATCCAATCTATCACATTCCCATGAATAGAAGCATAAAAGACTTGTCTACTTG 720
Query 721 CTTCCTCACTTACCACACGCTTTCTTCATCTTTCCAAGATGT-AA-AAAGGGAAGAGGAG 778
|||||||||||||||||||||||||||||||||||||||| | || |||| | ||||||
Sbjct 721 CTTCCTCACTTACCACACGCTTTCTTCATCTTTCCAAGATTTGAAGAAAGAG--GAGGAG 778
Query 779 AAGGAGAGGATAAGTGTGAGTGCATTTGGGATGGCCACTTACAAGATGCAAGGGAGGCTA 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 AGGGAGAGGATAAGTGTGAGTGCATTTGGGATGGCCACTTACAAGATGCAAGGGAAGCTA 838
Query 839 TGGGATAATGATAGATTGCTTTGCTTTTTGAGCGTAGCAGATTCTTGGCTAAAGCAGCTA 898
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGGACAGTGATAGATTGCTTTGCTTTTTGAGCGTAGCAGATTCTTGGCTAAAGCAGCTA 898
Query 899 AGGGTCCACCACCATGACTTCACCTACTTCACCACTACTACTCATTATCTTTGATATATG 958
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 899 AGGGTCCACCACCATGACTTCACTTACTTCACCACTACTCCTCATTATCTTTGATACATA 958
Query 959 TAGTGTTTTAGATCATTACTTGGTTAACAGTCTATTTAGCTTTGTTGTTTAAGAGTAGCA 1018
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 959 TAGTGTTTTAGATCATTACTTGGTTAACAATCTATTTAGTTTTGTTGTTTAAGAGTAGCA 1018
Query 1019 CATATCA--A-TAATGTTGGATTGTTGTTACTTGGGACTCTTTGGGAAGGATAGGTACTG 1075
||||||| | ||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 1019 CATATCATCAATAATGTTGGATTGTTGTTATTTGGGACTCTTAGGAAAGGATAGACACTG 1078
Query 1076 ACTTTTTCTTCACAAGACTTTTAT-ATCATAAATTTAGTTTGGGGTCAGATTGATGATGA 1134
|||||||||||| || | |||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1079 ACTTTTTCTTCAAAATATTTTTTTTATCATAAATTTGGTTTGGGGTCAGATTGATGATGA 1138
Query 1135 TGGGCTC--AATACATTTATTCTTTTCTAATGTTTTGTGGCTTTCTGTTTGTACAAACGC 1192
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGGGCTCTCAATACATTTATTCTCTTCTAATGTTTTGTGGCTTTCTGTTTGTACAAACGC 1198
Query 1193 ACGTTCTCTTGATTTTGGTATCCTTCTCTTTTT 1225
|||||||||||||||||||| |||||| |||||
Sbjct 1199 ACGTTCTCTTGATTTTGGTACCCTTCTTTTTTT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5