BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28160.1
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491959 jgi|Araly1|491959|fgenesh2_kg.7__1392__AT4G28160.1 688 0.0
> Ahg491959 jgi|Araly1|491959|fgenesh2_kg.7__1392__AT4G28160.1
Length=573
Score = 688 bits (372), Expect = 0.0
Identities = 521/589 (88%), Gaps = 26/589 (4%)
Strand=Plus/Plus
Query 7 TCTCTTCCATCTTCCCTCCACAAACCACACATTCAAGCTCT-TACCTTTTATCCTCAACT 65
||||||||||||||||||||||||||| ||||||||||||| |||| || || ||| |||
Sbjct 1 TCTCTTCCATCTTCCCTCCACAAACCAAACATTCAAGCTCTATACCATTGATTCTCTACT 60
Query 66 AACACAACAATGGCTTATACTCTGCAAAATCTGA--CAG-CCACAA-TTGTTCTGGTAAG 121
|||||||||||||||| ||||||||||||||||| | | |||||| ||| |||||||||
Sbjct 61 AACACAACAATGGCTTCTACTCTGCAAAATCTGATTCTGACCACAATTTG-TCTGGTAAG 119
Query 122 CCTGATTCTTGGATGTACAGAGGAAGTAACCGGAATGCGTTACATTCCCATTTCCCCCAC 181
|||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 120 CCTGCTTCTTGGATGTACAGAGGAAGTAAGCGGAGTGCGTTACATTCCCAACTCCCCCAC 179
Query 182 TCCCAGTGAGAGCAAACATTCAGACTTTCCTGTAAACATGGTGCCTCAACCATCTAGTCT 241
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 180 TCCCAGTGAGAGCAAACATTCAGACTTTCTTGTGAACATGGTGCCTCAACCATCTGGTCT 239
Query 242 CATTCCTGGTTTTGGAAGGTTCTTGCTACCTCCCACACCTAAGCTGCCATTCCTTCCTTA 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CATTCCTGGTTTTGGAAGGTTCTTGCTTCCTCCCACACCTAAGCTGCCATTCCTTCCTTA 299
Query 302 CAAAGATCCCCTTGCTGTTGCCCCAGCCACTTCAAATGGAACTCCTA---GTAATAAAGC 358
||||||||||||||||| ||||||| ||||||| |||||| ||||| || |||||||
Sbjct 300 CAAAGATCCCCTTGCTGCTGCCCCAACCACTTCTCATGGAATTCCTATTTGTTATAAAGC 359
Query 359 CCGCAGTCCGAGTTCAGGAGAAGATGAAGTTCCACCAGTGCCACAACCATGACCTGTCAA 418
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TCGCAGTCCGAGTTCACGAGAAGAACAAGTTCCACCAGTGCCACAACCATGACCTGTCAA 419
Query 419 CAAATAAGCTTTTGCTAGATGCAGAAGGGTATTCAATTCTGGTTCACATAACAAGTATAC 478
||||||||| |||||||||| || ||| || ||||||||||||| ||| ||||||| |||
Sbjct 420 CAAATAAGCATTTGCTAGATACAAAAGAGTCTTCAATTCTGGTTTACACAACAAGTCTAC 479
Query 479 TAGT-C-ATTTCATCATAGTCATATATCTTCATGATCTCTCTCTATATATACTTAAGAGG 536
|| | | || |||||| ||||||||||||| |||||||||||| |||| | ||
Sbjct 480 TACTACCATATCATCAGAGTCATATATCTTTGTGATCTCTCTCTG-ATAT--T---GA-- 531
Query 537 ATATTGAATAAATTCCAGAGCTTTTGCTTACATACTATCTAAAAATAAT 585
|| |||| | | |||||||||||||||||||||||||| ||||||
Sbjct 532 AT---GAAT---T-CTAGAGCTTTTGCTTACATACTATCTAAGAATAAT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5