BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28170.1

Length=694
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945218 jgi|Araly1|945218|scaffold_701447.1                        562    1e-159


> Ahg945218 jgi|Araly1|945218|scaffold_701447.1
Length=376

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 351/374 (94%), Gaps = 2/374 (1%)
 Strand=Plus/Plus

Query  79   GTCTCTTTCCAGTTACAAATGAGCAGCCACGACCATAGAAGGTTTGGAACGGCGGGTCCT  138
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  3    GTCTCTTTCCAGTTACAAATGAGCAGCCACGACCATCGAAGGTTTGGAACGGCGGGTCCT  62

Query  139  TTAGCTG-CGGACGAAGAAGGTCAAGGACGTTTTGAGAGCTCGGTGAATGCGGTGCCATT  197
            ||||| | |||  ||||||||  |||||||||||||||||||||||||||||||||| ||
Sbjct  63   TTAGCAGCCGG-GGAAGAAGGAGAAGGACGTTTTGAGAGCTCGGTGAATGCGGTGCCGTT  121

Query  198  TGGTTTGGTTGCGACCGGAGTTTTGATTGCTATCTTCCTCTTAATTGCtttttttGAGAG  257
            |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct  122  TGGTTTGGTTGCGACCGGAGTTTTAATCGCTATCTTCCTCTTAATTGCTATTTTTGAGAG  181

Query  258  GTTCATGTTCGTTAAACCAACTCCATCACCACCTCTCGACCAAAAGTTTCCTCCTTTTGC  317
            |||||| ||| |||  ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  182  GTTCATCTTCATTAGTCCAACTCAATCACCACCTCTCGACCAAAAGTTTCCTCCTTTTGC  241

Query  318  TTCCCCCAAGATGGATGTGTGTAAAAGAGAGATATCGGTGTTGATGCCTGGAGAAGATGT  377
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  242  TTCCCCCAAGATGGATGTGTGTAAGAGAGAGATATCGGTGTTGATGCCTGGAGAAGATGT  301

Query  378  CCCAACGTTCATTGCTCAGCCATGTCCTCCCTCATCATCATCAAGCTCTTTCTGAAACCT  437
            |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  302  CCCAACTTTCATTGCTCAGCCATGTCCTTCTTCATCATCATCAAGCTCTTTCTGAAACCT  361

Query  438  TCTTTCATCTCATT  451
            ||||  || |||||
Sbjct  362  TCTTGAATTTCATT  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25504231473


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5