BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28180.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491957 jgi|Araly1|491957|fgenesh2_kg.7__1390__AT4G28180.1 1258 0.0
> Ahg491957 jgi|Araly1|491957|fgenesh2_kg.7__1390__AT4G28180.1
Length=909
Score = 1258 bits (681), Expect = 0.0
Identities = 858/936 (92%), Gaps = 42/936 (4%)
Strand=Plus/Plus
Query 1 gagagagagagagGAATTAGCAAAAGTAGAAAGAAAATGGGATGCTGCTTCAGCGCCGGA 60
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAGAGGCATTAGCAAAAGTAGAAAG-AAATGGGATGCTGCTTCAGCGCCGGA 59
Query 61 AAAGTCACAGCTCCACCAGTCGCCGCCGCTCAAATTCCTCCACCCCTCGAAGAAGAATCC 120
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 60 AAAGTCACAGCTCCACCAGTCGCCGCCGCTCAAGTTCCTCCACCCATTGAAGAAGAATCC 119
Query 121 GTCAAAGAAGTCGTTGTTCAATCAGTCTCTGTCTCCGTCCCCATACCCATCTCCGTCCCT 180
|||||||||||||| || ||||| |||||||||||||| ||| | | ||||
Sbjct 120 GTCAAAGAAGTCGTGGTCCAATCGGTCTCTGTCTCCGT-CCC-T----A------TCCC- 166
Query 181 GTCCCAGTCCCCGACCTCGTTCCTTCCGCACCAACAGTCTCAGATTCAGAAGCTCAAGTT 240
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 167 -T----GTCCCCGACCTCGTTCCTTCCGCACCAACAGTATCAGATTCAGAAGCTCAAGTT 221
Query 241 CCTCTTCCTCTCTCACCTCCAGCTCCGGAGATCTCTCACAGCAAGTCCGACATTTGCAGC 300
|||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 222 CCTCGTCCTCTCTCACCACCAGCTCCGGAGATCTCTCAAAACAAGTCCGACATTTGCAGC 281
Query 301 GTCTCTGTCTCTCACAGCTACTCCACTGC--C-A---C-A--ACTGCTACCGCTGCGTCC 351
|||||||||||||||||||||||||| || | | | | |||||||||||||| |||
Sbjct 282 GTCTCTGTCTCTCACAGCTACTCCACCGCTACTACTGCTACTACTGCTACCGCTGCTTCC 341
Query 352 ATCCTCGAAGACGATGCTCTCAGCAAACCTCACCGTCCTCCTCCTCCTTCTTCTTCCACC 411
|| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 342 ATACTCGAAGACGATGCTCTCAGCAAACCCCACCGTCCTCCTCCTCCTTCTGCCTCCACC 401
Query 412 TCTCGCCGTAACAGGCCTGACAGAGTCCTCAGATCTCCGGCAGAACGACATTCTCCTCAG 471
|||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 402 TCTCGCCGCAACAGGCCTGACAGAGTCCTCAGATCTCCAGCGGAACGGCATTCTCCTCAA 461
Query 472 GGGAAGCAGCTCCGTCCTAGGTTAGTCCGAGAGAGACAGTCTCGTCAACCAAACCCTACT 531
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 462 GGGAAGCAGCTCCGTCCCAGGTTAGTCCGAGAGAGACAGTCTCGTCAACCAAACTCTACT 521
Query 532 CACAACCGGCGAAATGTGGATTCGGGTCCACTCCCACGGAGCGGGTTATCGGATAATCCG 591
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CACAACCGTCGAAATGTGGATTCGGGTCCACTCCCACGGAGCGGGTTATCGGATAATCCA 581
Query 592 AGGCGTCGCTCACAGTCTCCAGCCACTCGTGCCCCGAGTTCTGCAAGAAGAAGCCCCATG 651
|||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 582 AGGCGTCGCTCACAGTCTCCGGCCACTCGTGGCCCGAGTTCCGCAAGAAGAAGCCCCATG 641
Query 652 AAGAAACGAGTAGGAGCTCCGGAGAAAGACGGAGCAACagaggtgaagaagaaggaagaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AAGAAACGAGTAGGAGCTCCGGAGAAAGACGGAGCAACAGAGGTGAAGAAGAAGGAAGAA 701
Query 712 gaa-acggag--aaa-gtaactgctgaggtaaagaaggaagaagaTGTAACAGCTGTGAG 767
||| | | || ||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 702 GAAGAAG-AGGCAAAAGTAACTGTTGAGGTAAAGAAGGAAGAAGATGTAACAACTGTGAG 760
Query 768 AGACCCTGAAGTGTCCATGGAATGCTTCATCTTTCTCTGATGATCTCTTCTCCTTTCATC 827
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 761 AGACCCTGAAGTGTCCATGGAATGCTTCATCTTTCTCTGATGATCTCTTCTACTTTCATC 820
Query 828 ATTATTAACTCTGATGTGATTGATTGttttttttctttccctttttttGATTTGTAAATT 887
|||||||||||||||||||||||||||||||| | || |||||| ||||||||||||
Sbjct 821 ATTATTAACTCTGATGTGATTGATTGTTTTTT--C---CC-TTTTTT-GATTTGTAAATT 873
Query 888 GCGGAATGTATAAT-T-ATTAACCAAATCTTATGCG 921
||||||||| |||| | |||||||||||||| ||||
Sbjct 874 GCGGAATGTGTAATATTATTAACCAAATCTTTTGCG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5