BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28190.2
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491956 jgi|Araly1|491956|fgenesh2_kg.7__1389__AT4G28190.1 970 0.0
> Ahg491956 jgi|Araly1|491956|fgenesh2_kg.7__1389__AT4G28190.1
Length=1161
Score = 970 bits (525), Expect = 0.0
Identities = 659/715 (92%), Gaps = 43/715 (6%)
Strand=Plus/Plus
Query 881 AGACAAGTTGACACCAGCTGCATTCGAGAAGCATTCTGGAAGAGAAACGGCAAGGAAGTG 940
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 487 AGACAAGTTGACACCAGCTGCATTCGAGAAGCATTCTGGAAGAGAAACGGCTAGGAAGTG 546
Query 941 GAAAAACAATGTGTGGGTTATCATTGGGGGCGAAAAGGTTCCATTGTCAAAGACAGTATT 1000
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 547 GAAAAACAATGTGTGGGTTATCATTGGTGGCGAAAAGGTTCCATTGTCAAAGACAGTATT 606
Query 1001 GCTCAAGTACTACAATGAATCATCAAAGAAGTGCAGTAGATCAAACAGATCACAAGGTGC 1060
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTCAAATACTACAATGAATCATCAAAGAAGTGCAGTAGATCAAACAGATCACAAGGTGC 666
Query 1061 CAAAGTTTGCCATAGAGATGAGTTTGTTGGGTGTAACGATTGTGGTAAAGAGAGGAGGTT 1120
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 667 CAAAGTTTGCCATAGAGATGAGTTTGTTGGGTGTAACAAATGTGGTAAAGAGAGGAGGTT 726
Query 1121 CAGGCTGAGGAGCAGAGACGAATGCCGCTTGCACCACAATGCAATGGGTGATCCAAACTG 1180
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 727 CAGGCTGAGGAGCAGAGACGAATGCCGCTTGCACCACAATGCAATGGCTGATCCGAACTG 786
Query 1181 GAAATGCTCAGATTTCCCATACGACAAGATAACATGTGAGGAGGAAGAAGAGAGAGGGAG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAAATGCTCAGATTTCCCATACGACAAGATAACATGTGAGGAGGAAGAAGAGAGAGGGAG 846
Query 1241 CAGGAAGGTGTACAGAGGGTGCACACGTTCACCTAGTTGCAAAGGCTGCACTTCCTGCGT 1300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CAGGAAGGTGTACAGAGGCTGCACACGTTCACCTAGTTGCAAAGGCTGCACTTCCTGCGT 906
Query 1301 CTGTTTTGGCTGCGAGTTATGCCGTTTCTCTGAGTGTACTTGCCAGACTTGTGTCGACTT 1360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 907 CTGTTTTGGCTGCGAGTTATGCCGTTTCTCTGAATGTACTTGCCAGACTTGTGTCGACTT 966
Query 1361 CACCAGCAATGTCAAAGCTTGAAGAAGGCAGTCCATTAAGAAAAGaaaaaaaaaTGTCTG 1420
|||||||||||||||||||||||||||||| | || |||| ||||||
Sbjct 967 CACCAGCAATGTCAAAGCTTGAAGAAGGCA----A--AA-AAAA----------TGTCTG 1009
Query 1421 TCTCAGACTTTGTTCGTTGCATTTAATAACTTATTCTAAAACTCCAAACAGTTAATTATC 1480
|||||||||||||||| ||||||||||||||| || | || ||| | |
Sbjct 1010 TCTCAGACTTTGTTCGGTGCATTTAATAACTT-TT--A----TC-------TTA-T---C 1051
Query 1481 TTATCTATGGGTTGTGAATGGAGCAATTGaaaaaaaa-GTAGAAAAA--GTTGATTTCCA 1537
| || |||| ||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 1052 T-AT----GGGTAGTGAATGGAGCAATTAAAAAAAAAAGTAGAAAAAAAGTTGATTTCCA 1106
Query 1538 AGAAGAACATGCAGACGAGCATGCCTGAGTTTAGTGCATGTCTAGATTTTTGGCT 1592
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1107 AGAAGAACATGCAGACGAGCATGCCTGAGTTTAGTGCATGTCTTGATTTTTGGCT 1161
Score = 732 bits (396), Expect = 0.0
Identities = 462/492 (94%), Gaps = 11/492 (2%)
Strand=Plus/Plus
Query 305 AGAGAGGCTAAACT-AAAAGAGctctctttctaattta-tttctctctcttctcttctcC 362
|||||||||||| | ||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct 1 AGAGAGGCTAAAATAAAAAGCGCTCTCTTTCTTATTAATTTTCTCTCTCTTCTCTTCTCC 60
Query 363 CGAAAAGCCCTTAATAAGCTTTTGCTTTGATATCAGATCTCTCTTACGGCTTTTGAGATG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAAAAGCCCTTAATAAGCTTTTGCTTTGATATCAGATCTCTCTTACGGCTTTTGAGATG 120
Query 423 CGTGCTCCTTTAGGGCTTTCCTTTTATACCCCAAAACGAGGcctttccttcttctctcat 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CGTGCTCCTTTAGGGCTTTCCTTTTATACCCAAAAACGAGGCCTTTCCTTCTTCTCTCAT 180
Query 483 ctcctaattctaccctcttcctcttcctcttccttctctctctcttctcattctcctcAT 542
|| ||||||||| ||||||||||||| |||||||| ||||||||| || || || ||||
Sbjct 181 CTACTAATTCTAACCTCTTCCTCTTCTTCTTCCTTGTCTCTCTCTCCTT-TT-TC-TCAT 237
Query 543 ACGCTATAAGGAGAAAATCTCA--GAGA-GAGAGT--GATGGCGAACAATGAGGGAGAGA 597
||||||||||||| || ||||| |||| ||||| |||||||| ||||||| |||||
Sbjct 238 ACGCTATAAGGAGGAA-TCTCACAGAGAAGAGAGAAAGATGGCGAGTAATGAGGAAGAGA 296
Query 598 TGCAATGTGGGTCCATGTTGTTTAAGCAAGAGGAGCTACAAGAGATGAGTGGGGTCAATG 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCAATGTGGGTCCATGTTGTTCAAGCAAGAGGAGCTACAAGAGATGAGTGGGGTCAATG 356
Query 658 TTGGTGGCGATTACGTTGAGGTCATGTGTGGTTGTACCAGTCACCGATACGGCGATGCTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGGTGGCGATTACGTTGAGGTCATGTGTGGTTGTACCAGTCACCGATACGGCGATGCTG 416
Query 718 TTGCTAGACTTAGGGTTTTCCCCACCGGTGACCTTGAAATCACCTGCGAATGCACACCTG 777
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 417 TTGCTAGACTTAGGGTTTTCCCCACCGGTGACCTTGAAATCACCTGTGAATGCACACCCG 476
Query 778 GTTGCGATGAAG 789
||||||||||||
Sbjct 477 GTTGCGATGAAG 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5