BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28200.1
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945215 jgi|Araly1|945215|scaffold_701444.1 2950 0.0
> Ahg945215 jgi|Araly1|945215|scaffold_701444.1
Length=2005
Score = 2950 bits (1597), Expect = 0.0
Identities = 1875/2008 (93%), Gaps = 24/2008 (1%)
Strand=Plus/Plus
Query 3 CCGCCGAGAATCGAGAAGCAGCAGCCATGGCCGACGTAGTTCAATACCGCCTCGAGCGGA 62
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CCGCCGAGAATCGAGAAGCAGCAGCAATGGCCGACGTAGTTCAATACCGCCTCGAGCGGA 60
Query 63 TGGTTGACGAGCTTGATGATCTAGAACGAAGAGAAATCTTCACTCGTGCTGAGATAGCTG 122
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 61 TGGTTGACGAGCTTGATGATCTAGAACGAAGAGGAATCTTCACTCGTGCAGAGATAGCTG 120
Query 123 AGATCGTGAAGCAGCGGCGTAAGTTTGAGTACCGGCTCAAGCGTCCAAGCCCACTCAAAG 182
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 121 AGATCGTGAAGCAGCGCCGTAAGTTCGAGTACCGGCTAAAGCGTCCAAGCCCTCTCAAAG 180
Query 183 AAGATTTCATAGCCTATATTGACTATGAGGTTAAGCTCGATGAGCTCCGTCAGCTACGGA 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 AAGATTTCATAGCCTATATTGACTATGAGGTTAAGCTCGATGAGCTCCGCCAGCTACGGA 240
Query 243 GGAAATCGGTGGCGCGTGTGACTAAGAAGAGAAAGAAGAAATCAGTATCTGATTTCGCCG 302
||||| ||||||| || | |||||||||||||||||||||| || |||||||||||||
Sbjct 241 GGAAAGCGGTGGCTTATGAGTCTAAGAAGAGAAAGAAGAAATCGGTTTCTGATTTCGCCG 300
Query 303 GTGTGGCTAGGATTGTTGAGATTTATAGATTGGCGACGATGAGGTATAAAGGTGATATCA 362
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 301 GTGTGGCTAGGATTGTTGAGATTTATAGATTGGCGACTATGAGGTATAAAGGGGATATCA 360
Query 363 ATTTGTGGTTTAGGTATCTCGAGTTTTGTAAACAGAAGAGGCATGGAAGAATGAAAAAGG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 ATTTGTGGTTTAGGTATCTCGAGTTTTGTAAACAGAAGAGGCATGGAAGAATGAAGAAGG 420
Query 423 CATTGGCTCAAGCAATAAGGTTTCATCCAAAAGTGGCTGGAGTGTGGATATATGCTGCAT 482
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CTTTGGCTCAAGCAATAAGGTTTCATCCAAAAGTGGCTGGAGTGTGGATATATGCTGCGT 480
Query 483 CTTGGGAATTTGATAGAAACTTGAATGTTACAGCAGCTCGTGCTCTTATGCTGAATGGGC 542
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 481 CTTGGGAATTTGATAGAAACTTGAATGTTACTGCAGCTCGTGCTCTCATGCTGAATGGGC 540
Query 543 TGAGAGTGTGTTCAAACTCTGAAGACCTGTGGGTTGAGTATCTGCGAATGGAACTTACTT 602
||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 541 TGAGAGTTTGTTCAAACTCTGAAGACTTGTGGGTGGAGTATCTGCGGATGGAACTTACTT 600
Query 603 TTCTAAATAAGCTGAAAGCTCGTAAAGTTGCCCTTGGTGAA-GATAAAGGAAGTTTGGTG 661
|||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||
Sbjct 601 ACCTAAATAAGCTGAAAGCTCGTAGAGTTGCCCTTGGTGAAAG-TAAAGGTAGTTTGGTG 659
Query 662 CGTGACACGAAAACCGTTGAGGATGAGCAATGGAAAGATGAGAACAAAGAGTTATTTATG 721
|||||||||||| |||| ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 660 CGTGACACGAAATCCGTCGAGGATGAGAAATGGAAAGATGAAAACAAAGAGTTGTTTATG 719
Query 722 TCGCTAGATGAGAAAGAAGGAAATGAAAAAGAAGAGAATG---ACGAGGACTCTATTGTC 778
|||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||
Sbjct 720 TCGCTAGATGAGAAAGAAGGAAATGAAAAAGAAGAGGATGGGGAGGAGGACTCTAATGTT 779
Query 779 GAAGATGTTGAGGATGTGACTGAGAAAGTTGAT-TTCTTAAAAGAGAAAGGGTCCAATGT 837
||||||| | ||||||||||||||||||||||| || || || ||||||||||||||
Sbjct 780 GAAGATGCTAAGGATGTGACTGAGAAAGTTGATGTTTTTCGG-GAAAAAGGGTCCAATGT 838
Query 838 TCTTCAGACCATCTATAGTGGAGCCGTTGAGGCTATTCCATCTAGTTTTGACTTGAGGAA 897
||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 839 TCTTCAGACAATCTATAGTGGTGCCATTGAGGCTCTTCCATCTAGTTTTGACTTGAGGAA 898
Query 898 GCGTTTTTTGGAGATTCTAGAGGCAACAGACTTAGCGCATTCAGATGAAATGCGCAATAC 957
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 899 GCGTTTTTTGGAGATTCTAGAGGCAACGGACTTGGCGCATTCAGATGAAATCCGCAATAC 958
Query 958 CATTCTAAGTGACCTGAAGCGTGATTTTTGCAATGAACCTGAATACTGGAATTGGCTTGC 1017
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 959 GATTCTTAGTGACCTGAAGCGTGACTTTTGCAAGGAACCTGAATACTGGAATTGGCTTGC 1018
Query 1018 AAGACATGAAATGAGTGGTTGTATTAGCAATGAGGCAGGCCTAGAGTTTGCAAATCCTCA 1077
|||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||||||
Sbjct 1019 AAGACATGAAATGAGTGGTTGTATTAGCAAAGAGACTGGCCTAGAGTTTTCTAATCCTCA 1078
Query 1078 AATGCAAAAGGCTATTCAGGTTTTTGAAGAAGGCTTGCAAACTGTTACGTCAAGTTCTAT 1137
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1079 AATGCAAAAGGCTATTCAGGTTTTTGAAGAGGGCTTGCAAACTGTTACTTCAAGTTCTAT 1138
Query 1138 GTTTGAGATTTATATAAA-TTTTCTGATGGAGGCTATTGTACAGTCAAACGGCGACGA-G 1195
|||||||||||||||||| |||| ||||||||||||||| ||||||||| || ||||| |
Sbjct 1139 GTTTGAGATTTATATAAAGTTTT-TGATGGAGGCTATTGCACAGTCAAATGGTGACGATG 1197
Query 1196 AATGAAATCTCCTCTTT-GTCTAATCC----G---A-T-CATTTCACATATCATAAACGT 1245
| |||||| || || || ||||||| | | | | |||||| ||| ||||||||||
Sbjct 1198 A-TGAAATTTC-TCCTTCGTCTAATTCTATTGGGGACTGCATTTCGCATGTCATAAACGT 1255
Query 1246 GTACCAAAAGGCTGATGAAACTGGCTGTTTGACTGAAGAGCTTGCTGATGAATATGTTTC 1305
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1256 GTACCAAAAGGCTGATGAAACCGGGTGTTTGACTGAGGAGCTTGCTGATGAATATGTTTC 1315
Query 1306 TCTGTACTTGAAACTGGAAAAGACTCATGAAGCTCAGAAGCTAGCAGAAAAGCTCTGCTC 1365
|||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1316 TCTGTATTTGAAACTGGGAAAGACTCATGAAGCTCAGAAGCTAGCAGAAAAATTTTGCTC 1375
Query 1366 TGAAAAATTTGCTGGATCAGCTAAGTTGTGGCTTTCAAGAGTTTCCATTGAAATAAGATC 1425
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGGAAAATTTGCTGGATCAGCTAAGTTGTGGCTTTCAAGAGTTTCCATTGAAATAAGATC 1435
Query 1426 ACTTTCAGAGAACTCATCTCCTAGTAAAGCAGATTTTCAGACAGTCTTTGAGCTCCTTTC 1485
|||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1436 ACTTTCAGGGAACTCAACTCCTAGTAAAGCAGATTTGCAGACAGTTTTTGAGCTCCTTTC 1495
Query 1486 AAATGCTTTGAGGAAAGTACCGATCTCAGAATCTGAGAGCTTGTGGCTAATGGCTTTTAA 1545
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAATGCTTTGAGGAAAGTACCTATCTCAGAATCTGAGAGCTTGTGGCTAATGGCTTTTAA 1555
Query 1546 TTTCTTTGCTCATCAGCGAACTTATTTGGACAAACTTGTAGAGATGTCCATCCTATCAGC 1605
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1556 ATTCTTTGCTCATCAGAAAACTTATTTGGACAAACTTGTAGAGATGTCCATCCTATTAGC 1615
Query 1606 AACCAAAAGCCATGGGAGCGACCATGTGTTTTCTCTTGCTTCCACAGTGGTGAAATTTGT 1665
||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1616 AACCAAAAGCCATGGGAGCAACCATGTGTTTTCACTTTCTTCCACGGTGGTGAAATTTGT 1675
Query 1666 TCTTGAAACAAAAGGGGCCCACAGTGCGAGGAAGATATACAAGAGGTTCTTGGCTCTTCC 1725
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TCTTGAAACAAAAGGGGGCCACAGTGCGAGGAAGATATACAAGAGGTTCTTGGCTCTTCC 1735
Query 1726 TGGTCCCAGTCTTGTTCTATACAAAGGTTGCATTGAAATAGAGACCAACCTCATATCAGT 1785
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1736 TGGTCCCAGTCTTGTTCTATACAAAGATTGCATTGAAATAGAGACAAACCTTATATCAGT 1795
Query 1786 AGGTGATAAAGATGGTCTCAGTAATGCCCGGAAGCTGTATGATTCTGCTGTTGCAAGTTA 1845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 GGGTGATAAAGATGGTCTCAGTAATGCCCGGAAGCTGTATGATTCTGCTGTTGCAAGTTA 1855
Query 1846 CGGTCAAGACGTGGAGCTGTGGAAGAATTACTACTCATTGGAGACAAAGCTGGGAACATC 1905
| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1856 CAGTCAAGGCGTGGAGCTGTGGAAGAATTACTACTTATTGGAGACAAAGATGGGAACATC 1915
Query 1906 AGAGACAGCCAATGGAGTGTATTGGCGTGCGAGAAAGACTCTGAATGAATCCGCGGATTT 1965
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1916 AGAGACGGCCAATGGAGTGTATTGGCGGGCGAGAAAGACTCTGAAGGAATCGGCGGATTT 1975
Query 1966 CATAGTTTGATCTCTGATTTATAGGTAG 1993
||||||||||||| ||||| |||||||
Sbjct 1976 CATAGTTTGATCT--GATTTGTAGGTAG 2001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5