BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28210.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328874 jgi|Araly1|328874|fgenesh1_pm.C_scaffold_7001101 1602 0.0
> Ahg328874 jgi|Araly1|328874|fgenesh1_pm.C_scaffold_7001101
Length=1047
Score = 1602 bits (867), Expect = 0.0
Identities = 990/1050 (94%), Gaps = 6/1050 (1%)
Strand=Plus/Plus
Query 18 ATGACGCTTTTAGctctctcttcttctctgtcttc-tc--cttccttcttctgccgcaat 74
|||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 1 ATGACGCTCTTAGCTCTCTCTTCGTCTCTTTCTTCTTCTTCTTCCTTCTTCTGCCGCAAT 60
Query 75 tctcgtattcgtttctctcCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTT 134
|| | |||| ||| ||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 61 TCGAGAATTCCTTTTTCTCCTGTGTCGCGTCTTTCTTGTCTTAATGGTGATAATGAGCTA 120
Query 135 ACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCG 194
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 121 ACAATTTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGCCTCCGTCGTTTCGGGGCTCCG 180
Query 195 GGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCC 254
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GGGAAGTTTCCGAGTGTGAGACTTAGGGTTTCGACGAGGTGCGAGAAAGAAAATGCACCT 240
Query 255 AAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGAT 314
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AACGGTGGGATTGAAGATGAGGCGGAGCGATTTGCGAGGCGAGAGAGCACGATGCCTGAT 300
Query 315 AGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTT 374
||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 301 AGATTCAGATATTTGACCAAAGAAGCTCCGGATAGCCCAATTATCTGGCCTTGGTTTGTT 360
Query 375 GCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCAACTGGAGA 434
||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 361 GCGCTCGGGTTTCTCGTTTATGCGTGGAGAGCAGTCTTGTTTGAACTATCCAACTGGAGA 420
Query 435 AAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCTCTT 494
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 421 AAGGCGGCTTTCGCTATCCTTGGGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCCCTT 480
Query 495 GTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGCCTTGTAGAGACTGCAATG 554
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGTCTTGTAGAGACTGCAATG 540
Query 555 TACAGTGTTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACC 614
|||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||| |
Sbjct 541 TACAGTGTCAGGGCGTTCTATTCCGGGATTGTGGCTTATACCCCTGTGAGAGAGTTAATC 600
Query 615 ACGGTAATTCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCA 674
||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 601 ACGGTGATCCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAAACTCA 660
Query 675 ATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGGTGGGGTATGCAGCGGTGCAG 734
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 ATCAGCAAGCAGCCATATGTGGTAACTATTGCGGGTCTCGTGGGGTATGCAGCGGTGCAG 720
Query 735 AGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGG 794
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 721 AGTTACATCTCAGAGCCATTCTTCTGGACTGTCTTGTTGGGTTTGTATGGGTATTCGCGG 780
Query 795 TTGATAAAGAAGAGAGACGATGTGACCTCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGA 854
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TTGCTAAAGAAGAGAGACGATGTGACATCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGA 840
Query 855 GTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTAT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTAT 900
Query 915 CACAATTCAACGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCA 974
||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 901 CACAATTCAACTAAGA---CCTCAGAGGAAGAGAGTCAGAGCTTAAGGAGGGCACCACCA 957
Query 975 ATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAAATGGGCTGGA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAAATGGGCTGGA 1017
Query 1035 TACAGACACTTGACTTGGATGATTGTTTGA 1064
||||||||||||||||||||||||||||||
Sbjct 1018 TACAGACACTTGACTTGGATGATTGTTTGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5