BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28230.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491952 jgi|Araly1|491952|fgenesh2_kg.7__1385__AT4G28230.1 2285 0.0
> Ahg491952 jgi|Araly1|491952|fgenesh2_kg.7__1385__AT4G28230.1
Length=1539
Score = 2285 bits (1237), Expect = 0.0
Identities = 1447/1546 (94%), Gaps = 24/1546 (2%)
Strand=Plus/Plus
Query 1 GTCAAATAATCCTCAAGAAATACTCGCTTC-T-TCCTTCTTCCTCCTCAAGTGT-CC-AA 56
||||||||||| |||||||||||||||| | | ||||||||| ||||||||||| || ||
Sbjct 1 GTCAAATAATCGTCAAGAAATACTCGCTGCTTCTCCTTCTTCTTCCTCAAGTGTCCCAAA 60
Query 57 TTCTTTCTCCA-AACCCTAAATTTCTCGTAGAAGAAGATCAAATCGCTCTGAATATGACA 115
|||||||| || ||||||||||||||||| |||||||||| | |||||||||| |||||
Sbjct 61 TTCTTTCT-CAGAACCCTAAATTTCTCGTCGAAGAAGATCGATTCGCTCTGAAAATGACT 119
Query 116 TCAATTGAGGCAACAGAAACGCTTAACGCTCCTCCAAAGCTTCAGATCTGGAACAACGCT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAATTGAGGCAACAGAAACGCTTAACGCTCCTCCAAAGCTTCAGATCTGGAACAACGCT 179
Query 176 GCCTTCGACGATGGAGATTCTCAAATCACTTCCGCCATCGAAGCTTCTTCTTGGTCTCAC 235
|||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||
Sbjct 180 GCCTTCGACGATGGAGATTCTCAAATTACGTCCGCCATTGAAG---CTTCTTGGTCTCAC 236
Query 236 CTCAACGAATCATTCGATTCCGATTGTAGCAAGGAGAATCAGTTTCCGATTTCGGTTTCC 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 CTCAACGAATCATTCGATTCCGATTGTAGCAAGGAGAATCAGTCTCCGATTTCGGTTTCC 296
Query 296 TCTTCGCTCCAATCCTCAGTCTCGATCACCGAAGCTCCGTCAGCAAAATCCAAGACCGTG 355
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 297 TCTTCGCTCCGATCCTCAGTCTCGATCACCGAAGCTCCGTCAGCAAAATCCAAGATCGGG 356
Query 356 AAGACCAAATCCGCCGCAGATCGGAGT-AAAA-----A-G--CGAGATATCGATGCAGAG 406
||||||||||||| ||||||||||||| |||| | | ||||||||||||||||||
Sbjct 357 AAGACCAAATCCGGCGCAGATCGGAGTAAAAAGCGTGATGAACGAGATATCGATGCAGAG 416
Query 407 ATCGAAGAAGTAGAGAAGGAGATCGGACGATTATCGACGAAATTGGAGTCGCTCCGATTA 466
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 417 ATCGAAGAAGTAGAGAAGGAGATCGGACGGTTATCGACGAGATTGGAGTCGCTCCGATTA 476
Query 467 GAGAAGGCGGAGCAAACCGCAAGAAGCATTGCTATACGTGGAAGAATCGTTCCGGCGAAG 526
|||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 477 GAGAAGGCTGAGCAAACCGCAAGAAGTATCGCTATACGTGGAAGAATTGTTCCGGCGAAG 536
Query 527 TTCATGGAATCATCTCAGAAACAAGTGAAATTCGACGATTCGTGTTTTACAGGATCGAAA 586
||||||| | |||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct 537 TTCATGG-A--ATCTCAGAAACAAGTGAAATTCGATGAATCTTCTTTTACAGGATCCAAA 593
Query 587 TCAAGAGCCACTCGTAGAGGCGTTAGTCTTGGACCAGCGGAGATATTCAATTCCGCGAAG 646
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 594 TCAAGAACCACTCGTAGAGGCGTTAGTCTTGGACCGGCGGAGATATTCAATTCTGCGAAG 653
Query 647 AAATCTGAAACTGTGACTCCTCTTCAATCAGCTCAGAATCGACGCAAGTCTTGTTTCTTT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AAATCTGAAACTGTGACTCCTCTTCAATCAGCTCAGAATCGACGCAAGTCTTGTTTCTTT 713
Query 707 AAGCTTCCTGGAATCGAAGAAGGTCAAGTGACGACACGAGGTAAAGGAAGAACGAGTTTG 766
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 714 AAGCTTCCTGGAATCGAAGAAGGTAAAGTGACGACAAGAGGTAAAGGAAGAACGAGTTTG 773
Query 767 AGTCTGAGTCCGAGATCTCGCAAAGCGAAAATGACGGCAGCTCAGAAGCAAGCAGCTACG 826
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 774 AGTCTGAGTCCGAGATCTCGTAAAGCGAAAATGACGGCGGCTCAGAAGCAAGCAGCGACA 833
Query 827 ACGGTGGGGTCAAAGAGAGCTGTGAAGAAAGAAGAAGGAGTTCTCTTAACAATCCAGCCT 886
||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 834 ACGGTGGGGTCTAAGAGAGCGGTGAAGAAAGAAGAAGGAGTTCTCTTATCAATCCAGCCT 893
Query 887 AAGAGGCTATTCAAAGAAGATGAAAAGAATGTTTCTTTAAGGAAACCATTGAAACCAGGA 946
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAGAGGCTCTTCAAAGAAGATGAAAAGAATGTTTCTTTAAGGAAACCATTGAAACCAGGA 953
Query 947 AGAGTTGTGGCTAGTAGGTACAGTCAAATGGGTAAAACGCAGACTGGAGAGAAAGATGTT 1006
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 AGAGTTGTGGCTAGTAGGTACAGTCAAATGGGCAAAACGCAGACTGGAGAGAAAGATGTA 1013
Query 1007 AGGAAAAGGTCGTTGCCTGAGGATGAAGAGAAAGAGAATCATAAGAGGTCGgagaagaga 1066
|||||||||||||| |||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1014 AGGAAAAGGTCGTTACCTGAGAATGAAGAGAAAGAGAATAATCATAGGTCGGAGAAGAGA 1073
Query 1067 agagcttctgatgaaagta--a-caagagtgaagggagagtgaagaagagatgggagaTT 1123
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 1074 AGAGCTTCTGATGAAAATAGCAACAAGAGTGAAGGGAGAGTGAAGAAGAGATGGGAGATT 1133
Query 1124 CCAAGTGAAGTTGATCTGTATAGCAGTGGTGAGAACGGTGACGAGTCTCCTATAGTTAAG 1183
||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| |||
Sbjct 1134 CCAAGTGAAGTTGATCTGTATAGCAGTGGTGTGAATGATGACGTGTCTCCTATAGGCAAG 1193
Query 1184 GAGCTACCTAAGATCAGAACGCTTCGTCGTGTGGGAGGGAGCCCTCGTGATTCAGGTGCT 1243
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 GAGCTTCCTAAGATCAGAACGCTTCGTCGTTTGGGAGGGAGCCCTCGTGATTCAGGTGCT 1253
Query 1244 GCTAAGAGAGTTGCAGAATTACAAGCCAAGGATCGTAACTTCACTTTTTGCCAGCTTCTG 1303
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1254 GCAAAGAGAGTTGCGGAATTACAAGCCAAGGATCGTAATTTCACTTTTTGCCAGCTTCTG 1313
Query 1304 AAGTTTGAAGAATGAATGATCCGCTTATCAATTTGAGTAAAATCCACAACTCTTGTTGTG 1363
| ||||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||
Sbjct 1314 AGGTTTGAAGAATGAATGACCCGGTTATCAATTTGAGTAAAAACCTCAACTCTTGTTGTG 1373
Query 1364 GTTACTTGATTGTGAAtttgtttggttttgattttgtttttCGGCTCGCAGAGCAAGAAT 1423
|| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 1374 GTGACTTGATTGTGAATTTGGTTGGTTTTGATTTTGTTTTTCGGCTTGCATAGCAAGAAT 1433
Query 1424 CTTTGTTGGAATGCTTAATGTCTTTTCTAAATACACATTAAGATTGTGAGTTTTTGTTAT 1483
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1434 ATTTGTTGGAATGCTTAATGTCTTGGCTTCATACACATTAAGATTGTGAGTTTTTGTTAT 1493
Query 1484 CTTTTGTAAATGTCAGCTTCATGAAGAAAGATTCTTTCAAAAGGTT 1529
||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1494 CTTTTGTAAATGTCAACTTCATGAAGAAAGATTCTTTCAAACGGTT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5