BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28240.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491951 jgi|Araly1|491951|fgenesh2_kg.7__1384__AT4G28240.1 470 1e-131
> Ahg491951 jgi|Araly1|491951|fgenesh2_kg.7__1384__AT4G28240.1
Length=851
Score = 470 bits (254), Expect = 1e-131
Identities = 280/293 (96%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 91 TATAATCACTATTAAAGAATGAGTTATCTGAACAAAGTGTGGATGGCAGCATCGTTCGTA 150
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 46 TATAATCACTATTAAACCATGAGTTATCTGAACAAAGTGTGGATGGCTGCATCATTCGTA 105
Query 151 GCTGTTCAAGGAAACGCCGATCACGGCGTCAAGTTAAAAAGCGGTCTCACCTCTGCTCAC 210
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 106 GCTGTTCAAGGTAACGCCGATCACGGCGTCAAGTTGAAAAGCGGTCTCACCTCTGCTCAC 165
Query 211 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGTCCTCTCGCCGCCGCAGATCTAACCGGC 270
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 166 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGCCCTCTCGCCGCCGCAGATCTAACAGGA 225
Query 271 GACTCTCTCCCTTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCCGATGAGTCTCTC 330
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 226 GACTCTCTCCCCTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCTGATGAGTCTCTC 285
Query 331 CGACAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATAATGAT 383
|| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 286 CGCCAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATGATGAT 338
Score = 287 bits (155), Expect = 1e-76
Identities = 283/338 (84%), Gaps = 35/338 (10%)
Strand=Plus/Plus
Query 485 TCGCTTGAGTCGGATTTTCTGGATGCAAC--TGTATAG-TTTGGTTACATCTCTGTGAAT 541
|||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 392 TCGCTTGAGTTGGATTTTCTGGATGCAACTGTGTATAGTTTTGGTTACATCTCTGTGAAT 451
Query 542 ATTAGAATGTTCTAAAAGATCAAAGCAAGCCTTGGATTATGA-GAGAACTCTGTTCATTT 600
||||||||||||||| ||||||||||||| || || ||| | |||||||||||||||||
Sbjct 452 ATTAGAATGTTCTAAGAGATCAAAGCAAGTGTTCGAATAT-ATGAGAACTCTGTTCATTT 510
Query 601 TCTATATCTTAAAACATCGTTCGCTCACCAACTTTATTACAATCTGGAATCTTGATTGCG 660
||||||||| |||| ||| | | | | | | | || | | | | ||
Sbjct 511 TCTATATCT-AAAA-ATC-TG-G---A--A--T------C--T-TG-A-T-T-G----CG 542
Query 661 ATTACCACTAATTTCAACTTTATCCACAGTAAAATACGATTCTAAATTAAACAATAGTAC 720
|||||||||||||||||||||||||||||| |||| ||||||| ||| ||| ||||||||
Sbjct 543 ATTACCACTAATTTCAACTTTATCCACAGTGAAATGCGATTCTCAATAAAATAATAGTAC 602
Query 721 TAAAAT-ATTCCAAAACCATCGTTATCCAAAGAGACAGACAAGTCAGTCACTCCATAATG 779
||| | ||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 603 CAAA-TGATTCCAAAATCATCGTTATCTATTGAGACAGACAAGTCAGTCACTCCATAATG 661
Query 780 CTTTTATTTATTTATCTATTGTGGTTGTCATTATTGAG 817
||| ||||||||||| ||| ||||||||||||||||||
Sbjct 662 CTTCTATTTATTTATTTATAGTGGTTGTCATTATTGAG 699
Score = 211 bits (114), Expect = 8e-54
Identities = 133/142 (94%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 910 TCTTGGGCTATTTGGCCCATTTATGTAACTTGGCTTTGAATGAAATCGGAGCGTGGCTGC 969
|||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 712 TCTTGGGCTA--TGGCCCATGAATGTAACTTGGCTTTGAATGAAATCGGAGCGCGTCTGC 769
Query 970 TTAATCCAACGGTCCAAATCTGACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 1029
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTCATCTAACGGTCCAAATCTCACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 829
Query 1030 CATTTCCAACGGTCAAATAATC 1051
||||||||||||||||||||||
Sbjct 830 CATTTCCAACGGTCAAATAATC 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5